RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CABLES1Q8TDN4 633 aa13.64□□□□□ -0.23
NEDD9-201ENST00000379433 IPO9Q96P70 1041 aaKnown RBP13.64□□□□□ -0.23
NEDD9-201ENST00000379433 TSPYL4Q9UJ04 414 aa13.64□□□□□ -0.23
NEDD9-201ENST00000379433 IPO8O15397 1037 aaKnown RBP13.64□□□□□ -0.23
NEDD9-201ENST00000379433 LNPKQ9C0E8 428 aa13.64□□□□□ -0.23
NEDD9-201ENST00000379433 RWDD1Q9H446 243 aaPredicted RBP13.64□□□□□ -0.23
NEDD9-201ENST00000379433 RIMS1Q86UR5 1692 aaKnown RBP13.63□□□□□ -0.23
NEDD9-201ENST00000379433 SETD1AO15047 1707 aaKnown RBP13.63□□□□□ -0.23
NEDD9-201ENST00000379433 TECPR2O15040 1411 aa13.63□□□□□ -0.23
NEDD9-201ENST00000379433 LMOD3Q0VAK6 560 aa13.62□□□□□ -0.23
NEDD9-201ENST00000379433 F6X3S4 739 aa13.62□□□□□ -0.23
NEDD9-201ENST00000379433 SEC24BO95487 1268 aa13.62□□□□□ -0.23
NEDD9-201ENST00000379433 CALD1Q05682 793 aaKnown RBP13.62□□□□□ -0.23
NEDD9-201ENST00000379433 IPO4Q8TEX9 1081 aaKnown RBP13.62□□□□□ -0.23
NEDD9-201ENST00000379433 EIF2S2P20042 333 aaKnown RBP13.61□□□□□ -0.23
NEDD9-201ENST00000379433 HOXC9P31274 260 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 FAM161AQ3B820 660 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 DDX19BQ9UMR2 479 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 USP32Q8NFA0 1604 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 ARID3AQ99856 593 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 CDC42BPGQ6DT37 1551 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 IFT57Q9NWB7 429 aa13.61□□□□□ -0.23
NEDD9-201ENST00000379433 KIF20BQ96Q89 1820 aa13.6□□□□□ -0.23
NEDD9-201ENST00000379433 RGPD8O14715 1765 aaPredicted RBP13.6□□□□□ -0.23
NEDD9-201ENST00000379433 SPRYD3Q8NCJ5 442 aa13.6□□□□□ -0.23
NEDD9-201ENST00000379433 KIF16BQ96L93 1317 aa13.6□□□□□ -0.23
NEDD9-201ENST00000379433 MS4A1P11836 297 aa13.6□□□□□ -0.23
NEDD9-201ENST00000379433 C8orf34Q49A92 452 aa13.59□□□□□ -0.23
NEDD9-201ENST00000379433 ANKRD45Q5TZF3 282 aa13.59□□□□□ -0.23
NEDD9-201ENST00000379433 MED14O60244 1454 aa13.59□□□□□ -0.23
NEDD9-201ENST00000379433 AATKQ6ZMQ8 1374 aa13.59□□□□□ -0.23
NEDD9-201ENST00000379433 TICAM2Q86XR7 235 aa13.59□□□□□ -0.23
NEDD9-201ENST00000379433 TTC21AQ8NDW8 1320 aa13.58□□□□□ -0.24
NEDD9-201ENST00000379433 ATF3P18847 181 aa13.58□□□□□ -0.24
NEDD9-201ENST00000379433 CHRNA2Q15822 529 aa13.58□□□□□ -0.24
NEDD9-201ENST00000379433 MRPL50Q8N5N7 158 aaKnown RBP13.58□□□□□ -0.24
NEDD9-201ENST00000379433 NBPF6Q5VWK0 638 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 MPRIPQ6WCQ1 1025 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 NBPF4Q96M43 638 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 FLT4P35916 1363 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 IL16Q14005 1332 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 ANXA1P04083 346 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 G2E3Q7L622 706 aa13.57□□□□□ -0.24
NEDD9-201ENST00000379433 CDK12Q9NYV4 1490 aaPredicted RBP13.56□□□□□ -0.24
NEDD9-201ENST00000379433 KRT28Q7Z3Y7 464 aa13.56□□□□□ -0.24
NEDD9-201ENST00000379433 CEP170BQ9Y4F5 1589 aaPredicted RBP13.56□□□□□ -0.24
NEDD9-201ENST00000379433 MFAP1P55081 439 aaKnown RBP13.56□□□□□ -0.24
NEDD9-201ENST00000379433 DIP2AQ14689 1571 aa13.56□□□□□ -0.24
NEDD9-201ENST00000379433 GCP02774 474 aa13.56□□□□□ -0.24
NEDD9-201ENST00000379433 TEX2Q8IWB9 1127 aa13.56□□□□□ -0.24
NEDD9-201ENST00000379433 OVOS2A0A0J9YW53 1432 aa13.55□□□□□ -0.24
NEDD9-201ENST00000379433 OVOS2Q6IE36 1432 aa13.55□□□□□ -0.24
NEDD9-201ENST00000379433 LGR6Q9HBX8 967 aa13.55□□□□□ -0.24
NEDD9-201ENST00000379433 NLRP2Q9NX02 1062 aa13.55□□□□□ -0.24
NEDD9-201ENST00000379433 ARHGAP23Q9P227 1491 aa13.54□□□□□ -0.24
NEDD9-201ENST00000379433 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-201ENST00000379433 FKBP5Q13451 457 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-201ENST00000379433 ZBTB40Q9NUA8 1239 aa13.54□□□□□ -0.24
NEDD9-201ENST00000379433 ITSN1Q15811 1721 aa13.54□□□□□ -0.24
NEDD9-201ENST00000379433 GNAT3A8MTJ3 354 aa13.54□□□□□ -0.24
NEDD9-201ENST00000379433 RTL5Q5HYW3 569 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-201ENST00000379433 SLIT1O75093 1534 aa13.54□□□□□ -0.24
NEDD9-201ENST00000379433 SBNO1A3KN83 1393 aa13.53□□□□□ -0.24
NEDD9-201ENST00000379433 ZNF853P0CG23 659 aa13.53□□□□□ -0.24
NEDD9-201ENST00000379433 ALDH1L2Q3SY69 923 aa13.53□□□□□ -0.24
NEDD9-201ENST00000379433 USP35Q9P2H5 1018 aa13.53□□□□□ -0.24
NEDD9-201ENST00000379433 AXIN2Q9Y2T1 843 aa13.53□□□□□ -0.24
NEDD9-201ENST00000379433 NPHP4O75161 1426 aaPredicted RBP13.52□□□□□ -0.24
NEDD9-201ENST00000379433 IL17REQ8NFR9 667 aa13.52□□□□□ -0.24
NEDD9-201ENST00000379433 GAS2L2Q8NHY3 880 aa13.52□□□□□ -0.24
NEDD9-201ENST00000379433 ZNF530Q6P9A1 599 aaPredicted RBP13.52□□□□□ -0.24
NEDD9-201ENST00000379433 CHL1O00533 1208 aa13.52□□□□□ -0.25
NEDD9-201ENST00000379433 KCNQ3O43525 872 aa13.52□□□□□ -0.25
NEDD9-201ENST00000379433 STK31Q9BXU1 1019 aa13.52□□□□□ -0.25
NEDD9-201ENST00000379433 ADGRB2O60241 1585 aa13.52□□□□□ -0.25
NEDD9-201ENST00000379433 PTCH1Q13635 1447 aa13.51□□□□□ -0.25
NEDD9-201ENST00000379433 SLKQ9H2G2 1235 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-201ENST00000379433 MEIS3Q99687 375 aa13.51□□□□□ -0.25
NEDD9-201ENST00000379433 ZBTB7BO15156 539 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-201ENST00000379433 SMARCA5O60264 1052 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-201ENST00000379433 TEFQ10587 303 aa13.51□□□□□ -0.25
NEDD9-201ENST00000379433 ANKRD26Q9UPS8 1709 aa13.5□□□□□ -0.25
NEDD9-201ENST00000379433 ANKRD24Q8TF21 1146 aa13.5□□□□□ -0.25
NEDD9-201ENST00000379433 C19orf44Q9H6X5 657 aa13.5□□□□□ -0.25
NEDD9-201ENST00000379433 KCNG1Q9UIX4 513 aa13.49□□□□□ -0.25
NEDD9-201ENST00000379433 C16orf71Q8IYS4 520 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-201ENST00000379433 API5Q9BZZ5 524 aaKnown RBP13.49□□□□□ -0.25
NEDD9-201ENST00000379433 UPF2Q9HAU5 1272 aaKnown RBP13.49□□□□□ -0.25
NEDD9-201ENST00000379433 IGSF1Q8N6C5 1336 aa13.49□□□□□ -0.25
NEDD9-201ENST00000379433 PIP4K2AP48426 406 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-201ENST00000379433 PSMD1Q99460 953 aa13.49□□□□□ -0.25
NEDD9-201ENST00000379433 TMEM94Q12767 1356 aa13.48□□□□□ -0.25
NEDD9-201ENST00000379433 USP31Q70CQ4 1352 aa13.48□□□□□ -0.25
NEDD9-201ENST00000379433 A0A0G2JS52 829 aa13.48□□□□□ -0.25
NEDD9-201ENST00000379433 PATL2C9JE40 543 aaKnown RBP13.48□□□□□ -0.25
NEDD9-201ENST00000379433 IP6K1Q92551 441 aa13.48□□□□□ -0.25
NEDD9-201ENST00000379433 HDGFL1Q5TGJ6 251 aa13.48□□□□□ -0.25
NEDD9-201ENST00000379433 PHAXQ9H814 394 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms