RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 PPM1GO15355 546 aaPredicted RBP12.22□□□□□ -0.45
TRIM39-202ENST00000376659 CHL1O00533 1208 aa12.22□□□□□ -0.45
TRIM39-202ENST00000376659 PXDNLA1KZ92 1463 aa12.22□□□□□ -0.45
TRIM39-202ENST00000376659 MSH6P52701 1360 aa12.22□□□□□ -0.45
TRIM39-202ENST00000376659 GNAI1P63096 354 aa12.21□□□□□ -0.45
TRIM39-202ENST00000376659 KIF2CQ99661 725 aa12.21□□□□□ -0.45
TRIM39-202ENST00000376659 KIF1AQ12756 1690 aa12.21□□□□□ -0.45
TRIM39-202ENST00000376659 MAP3K19Q56UN5 1328 aa12.21□□□□□ -0.45
TRIM39-202ENST00000376659 C5P01031 1676 aa12.21□□□□□ -0.46
TRIM39-202ENST00000376659 XIRP1Q702N8 1843 aaKnown RBP12.21□□□□□ -0.46
TRIM39-202ENST00000376659 FLT4P35916 1363 aa12.2□□□□□ -0.46
TRIM39-202ENST00000376659 ITPRIPQ8IWB1 547 aa12.2□□□□□ -0.46
TRIM39-202ENST00000376659 FTSJ3Q8IY81 847 aaKnown RBP12.2□□□□□ -0.46
TRIM39-202ENST00000376659 NEFMP07197 916 aa12.19□□□□□ -0.46
TRIM39-202ENST00000376659 CEBPAP49715 358 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-202ENST00000376659 RBM25P49756 843 aaKnown RBP12.19□□□□□ -0.46
TRIM39-202ENST00000376659 INTS3Q68E01 1043 aaKnown RBP12.19□□□□□ -0.46
TRIM39-202ENST00000376659 SCN11AQ9UI33 1791 aa12.19□□□□□ -0.46
TRIM39-202ENST00000376659 TBC1D2Q9BYX2 928 aa12.19□□□□□ -0.46
TRIM39-202ENST00000376659 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-202ENST00000376659 HDGFP51858 240 aaKnown RBP12.18□□□□□ -0.46
TRIM39-202ENST00000376659 PKNOX2Q96KN3 472 aa12.18□□□□□ -0.46
TRIM39-202ENST00000376659 ABCC6O95255 1503 aa12.18□□□□□ -0.46
TRIM39-202ENST00000376659 CALD1Q05682 793 aaKnown RBP12.17□□□□□ -0.46
TRIM39-202ENST00000376659 DCTN1Q14203 1278 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 HSP90AB2PQ58FF8 381 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 PKD1L3Q7Z443 1732 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 TWISTNBQ3B726 338 aaPredicted RBP12.17□□□□□ -0.46
TRIM39-202ENST00000376659 AMOTL2Q9Y2J4 779 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 AK9Q5TCS8 1911 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 PODXL2Q9NZ53 605 aa12.17□□□□□ -0.46
TRIM39-202ENST00000376659 PARP4Q9UKK3 1724 aaKnown RBP12.17□□□□□ -0.46
TRIM39-202ENST00000376659 IPO8O15397 1037 aaKnown RBP12.16□□□□□ -0.46
TRIM39-202ENST00000376659 CHD1LQ86WJ1 897 aa12.16□□□□□ -0.46
TRIM39-202ENST00000376659 LMOD3Q0VAK6 560 aa12.16□□□□□ -0.46
TRIM39-202ENST00000376659 BMP2KLQ5H9B9 411 aa12.16□□□□□ -0.46
TRIM39-202ENST00000376659 KRT24Q2M2I5 525 aa12.15□□□□□ -0.46
TRIM39-202ENST00000376659 ADGRL3Q9HAR2 1447 aa12.15□□□□□ -0.46
TRIM39-202ENST00000376659 CEMIPQ8WUJ3 1361 aa12.15□□□□□ -0.46
TRIM39-202ENST00000376659 FRAT2O75474 233 aaPredicted RBP12.14□□□□□ -0.47
TRIM39-202ENST00000376659 GSPT1P15170 499 aaKnown RBP12.14□□□□□ -0.47
TRIM39-202ENST00000376659 SULT6B1Q6IMI4 303 aa12.14□□□□□ -0.47
TRIM39-202ENST00000376659 GCC1Q96CN9 775 aa12.14□□□□□ -0.47
TRIM39-202ENST00000376659 SLC26A8Q96RN1 970 aa12.14□□□□□ -0.47
TRIM39-202ENST00000376659 SHANK3Q9BYB0 1731 aa12.14□□□□□ -0.47
TRIM39-202ENST00000376659 SALL3Q9BXA9 1300 aa12.14□□□□□ -0.47
TRIM39-202ENST00000376659 PAPPAQ13219 1627 aa12.13□□□□□ -0.47
TRIM39-202ENST00000376659 ABCA3Q99758 1704 aa12.13□□□□□ -0.47
TRIM39-202ENST00000376659 MTHFSDQ2M296 383 aaKnown RBP12.13□□□□□ -0.47
TRIM39-202ENST00000376659 OVOS2A0A0G2JMS6 1433 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 PXDNQ92626 1479 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 MCM10Q7L590 875 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 C1orf115Q9H7X2 142 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 LAMB4A4D0S4 1761 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 FOXO3O43524 673 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 PTPRCP08575 1304 aa12.12□□□□□ -0.47
TRIM39-202ENST00000376659 UBR2Q8IWV8 1755 aa12.11□□□□□ -0.47
TRIM39-202ENST00000376659 EYA1Q99502 592 aa12.11□□□□□ -0.47
TRIM39-202ENST00000376659 DCTPP1Q9H773 170 aa12.11□□□□□ -0.47
TRIM39-202ENST00000376659 SNX21Q969T3 373 aa12.11□□□□□ -0.47
TRIM39-202ENST00000376659 KCNA6P17658 529 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 C22orf23Q9BZE7 217 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 SETD1BQ9UPS6 1966 aaKnown RBP12.1□□□□□ -0.47
TRIM39-202ENST00000376659 HOXC9P31274 260 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 CEP85Q6P2H3 762 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 ANKRD44Q8N8A2 993 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 PLEKHM2Q8IWE5 1019 aa12.1□□□□□ -0.47
TRIM39-202ENST00000376659 API5Q9BZZ5 524 aaKnown RBP12.09□□□□□ -0.47
TRIM39-202ENST00000376659 MRC1P22897 1456 aa12.09□□□□□ -0.47
TRIM39-202ENST00000376659 NUP188Q5SRE5 1749 aa12.09□□□□□ -0.47
TRIM39-202ENST00000376659 GSE1Q14687 1217 aa12.08□□□□□ -0.47
TRIM39-202ENST00000376659 LNPKQ9C0E8 428 aa12.08□□□□□ -0.47
TRIM39-202ENST00000376659 HTATSF1O43719 755 aaKnown RBP12.08□□□□□ -0.48
TRIM39-202ENST00000376659 CD2BP2O95400 341 aaKnown RBP12.08□□□□□ -0.48
TRIM39-202ENST00000376659 MAP3K5Q99683 1374 aa12.08□□□□□ -0.48
TRIM39-202ENST00000376659 HEG1Q9ULI3 1381 aa12.07□□□□□ -0.48
TRIM39-202ENST00000376659 RTL5Q5HYW3 569 aaPredicted RBP12.07□□□□□ -0.48
TRIM39-202ENST00000376659 TBC1D9Q6ZT07 1266 aa12.07□□□□□ -0.48
TRIM39-202ENST00000376659 ESF1Q9H501 851 aaKnown RBP12.07□□□□□ -0.48
TRIM39-202ENST00000376659 EID1Q9Y6B2 187 aa12.06□□□□□ -0.48
TRIM39-202ENST00000376659 ARFGEF2Q9Y6D5 1785 aa12.06□□□□□ -0.48
TRIM39-202ENST00000376659 ELL2O00472 640 aaPredicted RBP12.06□□□□□ -0.48
TRIM39-202ENST00000376659 G2E3Q7L622 706 aa12.06□□□□□ -0.48
TRIM39-202ENST00000376659 THEMISQ8N1K5 641 aaPredicted RBP12.06□□□□□ -0.48
TRIM39-202ENST00000376659 TJP1Q07157 1748 aa12.05□□□□□ -0.48
TRIM39-202ENST00000376659 IL17RAQ96F46 866 aa12.05□□□□□ -0.48
TRIM39-202ENST00000376659 RTN4Q9NQC3 1192 aaKnown RBP12.05□□□□□ -0.48
TRIM39-202ENST00000376659 SOS1Q07889 1333 aaPredicted RBP12.05□□□□□ -0.48
TRIM39-202ENST00000376659 TTC22Q5TAA0 569 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 MEIS3Q99687 375 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 IL17REQ8NFR9 667 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 OSBPL3Q9H4L5 887 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 BABAM1Q9NWV8 329 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 NUTM2FA1L443 756 aa12.04□□□□□ -0.48
TRIM39-202ENST00000376659 MFAP1P55081 439 aaKnown RBP12.04□□□□□ -0.48
TRIM39-202ENST00000376659 OTUD7AQ8TE49 926 aaPredicted RBP12.04□□□□□ -0.48
TRIM39-202ENST00000376659 CHMP4BQ9H444 224 aaKnown RBP12.03□□□□□ -0.48
TRIM39-202ENST00000376659 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.03□□□□□ -0.48
TRIM39-202ENST00000376659 BECN1Q14457 450 aa12.03□□□□□ -0.48
TRIM39-202ENST00000376659 NPHP4O75161 1426 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms