RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CALD1Q05682 793 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 RABEP1Q15276 862 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 CLEC17AQ6ZS10 378 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 ZGPATQ8N5A5 531 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 ZNF428Q96B54 188 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 RBM27Q9P2N5 1060 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 MAP2P11137 1827 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 PIK3R4Q99570 1358 aa27.59■■■□□ 2.01
TRIM28-202ENST00000341753 FAM83GA6ND36 823 aa27.59■■■□□ 2.01
TRIM28-202ENST00000341753 CPS1P31327 1500 aa27.59■■■□□ 2.01
TRIM28-202ENST00000341753 CPSF1Q10570 1443 aaKnown RBP27.58■■■□□ 2.01
TRIM28-202ENST00000341753 RBSNQ9H1K0 784 aa27.58■■■□□ 2.01
TRIM28-202ENST00000341753 LMBRD1Q9NUN5 540 aa27.58■■■□□ 2.01
TRIM28-202ENST00000341753 CCDC61Q9Y6R9 512 aa27.58■■■□□ 2.01
TRIM28-202ENST00000341753 DCTN1Q14203 1278 aa27.58■■■□□ 2.01
TRIM28-202ENST00000341753 GNAI1P63096 354 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 SLC26A8Q96RN1 970 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 SOX12O15370 315 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 PRPF40AO75400 957 aaKnown RBP27.57■■■□□ 2
TRIM28-202ENST00000341753 LTKP29376 864 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 TTC22Q5TAA0 569 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 FOXD4L5Q5VV16 416 aaPredicted RBP27.57■■■□□ 2
TRIM28-202ENST00000341753 FOXD4L4Q8WXT5 416 aaPredicted RBP27.57■■■□□ 2
TRIM28-202ENST00000341753 USP26Q9BXU7 913 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 ROBO2Q9HCK4 1378 aa27.57■■■□□ 2
TRIM28-202ENST00000341753 SMARCA5O60264 1052 aaPredicted RBP27.56■■■□□ 2
TRIM28-202ENST00000341753 IL13P35225 146 aa27.56■■■□□ 2
TRIM28-202ENST00000341753 COG3Q96JB2 828 aa27.56■■■□□ 2
TRIM28-202ENST00000341753 RBM10P98175 930 aaKnown RBP27.55■■■□□ 2
TRIM28-202ENST00000341753 EDC4Q6P2E9 1401 aaKnown RBP27.55■■■□□ 2
TRIM28-202ENST00000341753 IFT57Q9NWB7 429 aa27.55■■■□□ 2
TRIM28-202ENST00000341753 PRIM1P49642 420 aaKnown RBP27.54■■■□□ 2
TRIM28-202ENST00000341753 ZNF445P59923 1031 aa27.54■■■□□ 2
TRIM28-202ENST00000341753 NUCB2P80303 420 aa27.54■■■□□ 2
TRIM28-202ENST00000341753 OFD1O75665 1012 aa27.53■■■□□ 2
TRIM28-202ENST00000341753 IBTKQ9P2D0 1353 aaPredicted RBP27.53■■■□□ 2
TRIM28-202ENST00000341753 TMEM2Q9UHN6 1383 aa27.52■■■□□ 2
TRIM28-202ENST00000341753 CYP2E1P05181 493 aaPredicted RBP27.52■■■□□ 2
TRIM28-202ENST00000341753 DCTPP1Q9H773 170 aa27.52■■■□□ 2
TRIM28-202ENST00000341753 GPT2Q8TD30 523 aa27.52■■■□□ 2
TRIM28-202ENST00000341753 API5Q9BZZ5 524 aaKnown RBP27.52■■■□□ 2
TRIM28-202ENST00000341753 KRT24Q2M2I5 525 aa27.51■■□□□ 1.99
TRIM28-202ENST00000341753 R3HCC1Q9Y3T6 440 aaKnown RBP27.51■■□□□ 1.99
TRIM28-202ENST00000341753 ZNF853P0CG23 659 aa27.51■■□□□ 1.99
TRIM28-202ENST00000341753 SDSP20132 328 aa27.51■■□□□ 1.99
TRIM28-202ENST00000341753 XPCQ01831 940 aaPredicted RBP27.5■■□□□ 1.99
TRIM28-202ENST00000341753 INTS3Q68E01 1043 aaKnown RBP27.5■■□□□ 1.99
TRIM28-202ENST00000341753 AEBP1Q8IUX7 1158 aa27.49■■□□□ 1.99
TRIM28-202ENST00000341753 ZDHHC9Q9Y397 364 aa27.49■■□□□ 1.99
TRIM28-202ENST00000341753 KNDC1Q76NI1 1749 aa27.49■■□□□ 1.99
TRIM28-202ENST00000341753 HDGFP51858 240 aaKnown RBP27.48■■□□□ 1.99
TRIM28-202ENST00000341753 NSFL1CQ9UNZ2 370 aaKnown RBP27.48■■□□□ 1.99
TRIM28-202ENST00000341753 PDZRN4Q6ZMN7 1036 aaPredicted RBP27.47■■□□□ 1.99
TRIM28-202ENST00000341753 CFAP44Q96MT7 982 aa27.47■■□□□ 1.99
TRIM28-202ENST00000341753 EIF2AK3Q9NZJ5 1116 aaKnown RBP27.46■■□□□ 1.99
TRIM28-202ENST00000341753 ADAMTS13Q76LX8 1427 aa27.45■■□□□ 1.99
TRIM28-202ENST00000341753 SYCE3A1L190 88 aa27.45■■□□□ 1.98
TRIM28-202ENST00000341753 ST18O60284 1047 aa27.45■■□□□ 1.98
TRIM28-202ENST00000341753 PDCL3Q9H2J4 239 aa27.45■■□□□ 1.98
TRIM28-202ENST00000341753 ACEP12821 1306 aa27.45■■□□□ 1.98
TRIM28-202ENST00000341753 CDC42BPGQ6DT37 1551 aa27.45■■□□□ 1.98
TRIM28-202ENST00000341753 TMEM63CQ9P1W3 806 aa27.44■■□□□ 1.98
TRIM28-202ENST00000341753 ANKRD44Q8N8A2 993 aa27.43■■□□□ 1.98
TRIM28-202ENST00000341753 RNF214Q8ND24 703 aa27.42■■□□□ 1.98
TRIM28-202ENST00000341753 FAM13BQ9NYF5 915 aa27.42■■□□□ 1.98
TRIM28-202ENST00000341753 CEP85Q6P2H3 762 aa27.42■■□□□ 1.98
TRIM28-202ENST00000341753 TECPR2O15040 1411 aa27.42■■□□□ 1.98
TRIM28-202ENST00000341753 UBR1Q8IWV7 1749 aa27.41■■□□□ 1.98
TRIM28-202ENST00000341753 NOL7Q9UMY1 257 aaKnown RBP27.41■■□□□ 1.98
TRIM28-202ENST00000341753 CDK12Q9NYV4 1490 aaPredicted RBP27.41■■□□□ 1.98
TRIM28-202ENST00000341753 CASC1Q6TDU7 716 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 CWC22Q9HCG8 908 aaKnown RBP27.4■■□□□ 1.98
TRIM28-202ENST00000341753 TTC21BQ7Z4L5 1316 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 SULT6B1Q6IMI4 303 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 NOL8Q76FK4 1167 aaKnown RBP27.4■■□□□ 1.98
TRIM28-202ENST00000341753 PDLIM2Q96JY6 352 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 MEIS3Q99687 375 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 ATP10DQ9P241 1426 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 ARID3AQ99856 593 aa27.4■■□□□ 1.98
TRIM28-202ENST00000341753 ZBTB7CA1YPR0 619 aa27.39■■□□□ 1.98
TRIM28-202ENST00000341753 EIF4A2Q14240 407 aaKnown RBP27.39■■□□□ 1.98
TRIM28-202ENST00000341753 HSP90AB2PQ58FF8 381 aa27.39■■□□□ 1.97
TRIM28-202ENST00000341753 TSHZ3Q63HK5 1081 aa27.39■■□□□ 1.97
TRIM28-202ENST00000341753 AATKQ6ZMQ8 1374 aa27.39■■□□□ 1.97
TRIM28-202ENST00000341753 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.38■■□□□ 1.97
TRIM28-202ENST00000341753 MSH6P52701 1360 aa27.38■■□□□ 1.97
TRIM28-202ENST00000341753 FOXD4L6Q3SYB3 417 aaPredicted RBP27.38■■□□□ 1.97
TRIM28-202ENST00000341753 FOXD4L3Q6VB84 417 aaPredicted RBP27.38■■□□□ 1.97
TRIM28-202ENST00000341753 SIRT1Q96EB6 747 aa27.38■■□□□ 1.97
TRIM28-202ENST00000341753 PTPRUQ92729 1446 aa27.37■■□□□ 1.97
TRIM28-202ENST00000341753 MON2Q7Z3U7 1717 aa27.36■■□□□ 1.97
TRIM28-202ENST00000341753 NEK4P51957 841 aa27.35■■□□□ 1.97
TRIM28-202ENST00000341753 LMOD3Q0VAK6 560 aa27.35■■□□□ 1.97
TRIM28-202ENST00000341753 LRSAM1Q6UWE0 723 aa27.35■■□□□ 1.97
TRIM28-202ENST00000341753 AMOTL2Q9Y2J4 779 aa27.35■■□□□ 1.97
TRIM28-202ENST00000341753 REC8O95072 547 aa27.34■■□□□ 1.97
TRIM28-202ENST00000341753 UQCRHLA0A096LP55 91 aa27.34■■□□□ 1.97
TRIM28-202ENST00000341753 UQCRHP07919 91 aa27.34■■□□□ 1.97
TRIM28-202ENST00000341753 HS1BP3Q53T59 392 aa27.34■■□□□ 1.97
TRIM28-202ENST00000341753 MCM10Q7L590 875 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms