RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TECPR2O15040 1411 aa14.44□□□□□ -0.1
VPS4A-201ENST00000254950 RBM19Q9Y4C8 960 aaKnown RBP14.43□□□□□ -0.1
VPS4A-201ENST00000254950 UBTFL1P0CB47 393 aaPredicted RBP14.43□□□□□ -0.1
VPS4A-201ENST00000254950 CCT4P50991 539 aaKnown RBP14.43□□□□□ -0.1
VPS4A-201ENST00000254950 RBM42Q9BTD8 480 aaKnown RBP14.43□□□□□ -0.1
VPS4A-201ENST00000254950 AKAP4Q5JQC9 854 aa14.42□□□□□ -0.1
VPS4A-201ENST00000254950 C20orf194Q5TEA3 1177 aa14.42□□□□□ -0.1
VPS4A-201ENST00000254950 NGLY1Q96IV0 654 aa14.42□□□□□ -0.1
VPS4A-201ENST00000254950 GPATCH3Q96I76 525 aa14.41□□□□□ -0.1
VPS4A-201ENST00000254950 TSHZ2Q9NRE2 1034 aa14.41□□□□□ -0.1
VPS4A-201ENST00000254950 GTF2E1P29083 439 aaPredicted RBP14.4□□□□□ -0.1
VPS4A-201ENST00000254950 TMEM57Q8N5G2 664 aa14.4□□□□□ -0.1
VPS4A-201ENST00000254950 SPINK5Q9NQ38 1064 aaPredicted RBP14.4□□□□□ -0.1
VPS4A-201ENST00000254950 EXOC5O00471 708 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 SRCIN1Q9C0H9 1055 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 TRIM35Q9UPQ4 493 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 MAP3K5Q99683 1374 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 ZCRB1Q8TBF4 217 aaKnown RBP14.39□□□□□ -0.11
VPS4A-201ENST00000254950 TMOD3Q9NYL9 352 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 PTPRUQ92729 1446 aa14.39□□□□□ -0.11
VPS4A-201ENST00000254950 FAM161AQ3B820 660 aa14.38□□□□□ -0.11
VPS4A-201ENST00000254950 GNAI2P04899 355 aa14.38□□□□□ -0.11
VPS4A-201ENST00000254950 TRIM27P14373 513 aa14.38□□□□□ -0.11
VPS4A-201ENST00000254950 KCNJ4P48050 445 aa14.38□□□□□ -0.11
VPS4A-201ENST00000254950 CPSF1Q10570 1443 aaKnown RBP14.38□□□□□ -0.11
VPS4A-201ENST00000254950 NBPF6Q5VWK0 638 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 NBPF4Q96M43 638 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 LNPKQ9C0E8 428 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 PDE4AP27815 886 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 HSP90AB4PQ58FF6 505 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 C1orf115Q9H7X2 142 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 ARHGAP23Q9P227 1491 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 SLIT1O75093 1534 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 KIF24Q5T7B8 1368 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 TRIM6-TRIM34B2RNG4 842 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 PTCD1O75127 700 aaKnown RBP14.37□□□□□ -0.11
VPS4A-201ENST00000254950 MYL6BP14649 208 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 GORABQ5T7V8 394 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 ARHGEF25Q86VW2 580 aa14.37□□□□□ -0.11
VPS4A-201ENST00000254950 SIGLEC1Q9BZZ2 1709 aa14.36□□□□□ -0.11
VPS4A-201ENST00000254950 MED14O60244 1454 aa14.36□□□□□ -0.11
VPS4A-201ENST00000254950 POLR1AO95602 1720 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-201ENST00000254950 IL2RBP14784 551 aa14.36□□□□□ -0.11
VPS4A-201ENST00000254950 C8orf58Q8NAV2 365 aa14.36□□□□□ -0.11
VPS4A-201ENST00000254950 FMNL2Q96PY5 1086 aa14.36□□□□□ -0.11
VPS4A-201ENST00000254950 CDK12Q9NYV4 1490 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-201ENST00000254950 MCCP23508 829 aa14.35□□□□□ -0.11
VPS4A-201ENST00000254950 DBF4Q9UBU7 674 aaPredicted RBP14.35□□□□□ -0.11
VPS4A-201ENST00000254950 DIP2AQ14689 1571 aa14.35□□□□□ -0.11
VPS4A-201ENST00000254950 PTPRCP08575 1304 aa14.35□□□□□ -0.11
VPS4A-201ENST00000254950 RTL1A6NKG5 1358 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 KIF6Q6ZMV9 814 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 G3BP1Q13283 466 aaKnown RBP eCLIP14.34□□□□□ -0.11
VPS4A-201ENST00000254950 KIAA1211Q6ZU35 1233 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 GCC1Q96CN9 775 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 PLEKHF1Q96S99 279 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 ARHGAP45Q92619 1136 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 VAMP4O75379 141 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 MFAP1P55081 439 aaKnown RBP14.34□□□□□ -0.11
VPS4A-201ENST00000254950 BTG4Q9NY30 223 aa14.34□□□□□ -0.11
VPS4A-201ENST00000254950 FLIIQ13045 1269 aa14.33□□□□□ -0.12
VPS4A-201ENST00000254950 BRINP3Q76B58 766 aa14.33□□□□□ -0.12
VPS4A-201ENST00000254950 PDZRN3Q9UPQ7 1066 aa14.33□□□□□ -0.12
VPS4A-201ENST00000254950 STARD3NLO95772 234 aa14.33□□□□□ -0.12
VPS4A-201ENST00000254950 IGSF1Q8N6C5 1336 aa14.32□□□□□ -0.12
VPS4A-201ENST00000254950 TSPYL6Q8N831 410 aa14.32□□□□□ -0.12
VPS4A-201ENST00000254950 USP31Q70CQ4 1352 aa14.32□□□□□ -0.12
VPS4A-201ENST00000254950 RPAP2Q8IXW5 612 aaPredicted RBP14.32□□□□□ -0.12
VPS4A-201ENST00000254950 DCAF5Q96JK2 942 aa14.32□□□□□ -0.12
VPS4A-201ENST00000254950 HYPKQ9NX55 129 aa14.32□□□□□ -0.12
VPS4A-201ENST00000254950 RNMTO43148 476 aaKnown RBP14.31□□□□□ -0.12
VPS4A-201ENST00000254950 BABAM1Q9NWV8 329 aa14.31□□□□□ -0.12
VPS4A-201ENST00000254950 CDC42BPGQ6DT37 1551 aa14.31□□□□□ -0.12
VPS4A-201ENST00000254950 CHL1O00533 1208 aa14.31□□□□□ -0.12
VPS4A-201ENST00000254950 F6X3S4 739 aa14.31□□□□□ -0.12
VPS4A-201ENST00000254950 SURF6O75683 361 aaKnown RBP14.31□□□□□ -0.12
VPS4A-201ENST00000254950 SNRPA1P09661 255 aaKnown RBP14.3□□□□□ -0.12
VPS4A-201ENST00000254950 IFIT2P09913 472 aaKnown RBP14.3□□□□□ -0.12
VPS4A-201ENST00000254950 MRPL50Q8N5N7 158 aaKnown RBP14.3□□□□□ -0.12
VPS4A-201ENST00000254950 ARHGEF28Q8N1W1 1705 aaKnown RBP14.3□□□□□ -0.12
VPS4A-201ENST00000254950 LARP1Q6PKG0 1096 aaKnown RBP14.3□□□□□ -0.12
VPS4A-201ENST00000254950 C1orf167Q5SNV9 1468 aa14.3□□□□□ -0.12
VPS4A-201ENST00000254950 C3P01024 1663 aa14.3□□□□□ -0.12
VPS4A-201ENST00000254950 KRT24Q2M2I5 525 aa14.3□□□□□ -0.12
VPS4A-201ENST00000254950 HSCBQ8IWL3 235 aa14.3□□□□□ -0.12
VPS4A-201ENST00000254950 C8orf37Q96NL8 207 aa14.3□□□□□ -0.12
VPS4A-201ENST00000254950 SPATA31A3Q5VYP0 1347 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 ZNF521Q96K83 1311 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 KIAA0232Q92628 1395 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 DNAAF4Q8WXU2 420 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 MYO5BQ9ULV0 1848 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 SOS1Q07889 1333 aaPredicted RBP14.29□□□□□ -0.12
VPS4A-201ENST00000254950 KDM4FA0A1W2PPD8 638 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 SLC39A6Q13433 755 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 RILPL2Q969X0 211 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 PCDH11XQ9BZA7 1347 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 PCDH11YQ9BZA8 1340 aa14.29□□□□□ -0.12
VPS4A-201ENST00000254950 NFATC2IPQ8NCF5 419 aa14.28□□□□□ -0.12
VPS4A-201ENST00000254950 CPS1P31327 1500 aa14.28□□□□□ -0.12
VPS4A-201ENST00000254950 PNPLA6Q8IY17 1366 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms