RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TOM1O60784 492 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 CDK5RAP3Q96JB5 506 aa15.14■□□□□ 0.01
USP40-201ENST00000251722 RAB11FIP3O75154 756 aa15.14■□□□□ 0.01
USP40-201ENST00000251722 UHRF1BP1LA0JNW5 1464 aa15.14■□□□□ 0.01
USP40-201ENST00000251722 ESPNB1AK53 854 aa15.14■□□□□ 0.01
USP40-201ENST00000251722 ATF7IPQ6VMQ6 1270 aa15.14■□□□□ 0.01
USP40-201ENST00000251722 ALDH1L2Q3SY69 923 aa15.13■□□□□ 0.01
USP40-201ENST00000251722 ASXL2Q76L83 1435 aa15.13■□□□□ 0.01
USP40-201ENST00000251722 KRI1Q8N9T8 703 aaKnown RBP15.13■□□□□ 0.01
USP40-201ENST00000251722 WASF1Q92558 559 aa15.13■□□□□ 0.01
USP40-201ENST00000251722 EPS15P42566 896 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 UQCRHLA0A096LP55 91 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 UQCRHP07919 91 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 PANK1Q8TE04 598 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 NOB1Q9ULX3 412 aaKnown RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 TAF7Q15545 349 aaPredicted RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 SOGA3Q5TF21 947 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 C14orf93Q9H972 538 aaKnown RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 ZHX1Q9UKY1 873 aaPredicted RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 NUP160Q12769 1436 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 ACBD3Q9H3P7 528 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 CGNQ9P2M7 1197 aaKnown RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 WDR97A6NE52 1622 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
USP40-201ENST00000251722 ABCC10Q5T3U5 1492 aa15.12■□□□□ 0.01
USP40-201ENST00000251722 EXOC5O00471 708 aa15.11■□□□□ 0.01
USP40-201ENST00000251722 NOL7Q9UMY1 257 aaKnown RBP15.11■□□□□ 0.01
USP40-201ENST00000251722 NBPF8Q3BBV2 869 aa15.11■□□□□ 0.01
USP40-201ENST00000251722 GTPBP4Q9BZE4 634 aaKnown RBP15.11■□□□□ 0.01
USP40-201ENST00000251722 A2MP01023 1474 aa15.11■□□□□ 0.01
USP40-201ENST00000251722 MBD3O95983 291 aa15.11■□□□□ 0.01
USP40-201ENST00000251722 FOXD4L5Q5VV16 416 aaPredicted RBP15.11■□□□□ 0.01
USP40-201ENST00000251722 FOXD4L4Q8WXT5 416 aaPredicted RBP15.11■□□□□ 0.01
USP40-201ENST00000251722 LEKR1Q6ZMV7 388 aa15.11■□□□□ 0.01
USP40-201ENST00000251722 FAM177BA6PVY3 158 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 TXLNBQ8N3L3 684 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 ZSCAN31Q96LW9 406 aaPredicted RBP15.1■□□□□ 0.01
USP40-201ENST00000251722 HYPKQ9NX55 129 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 ANKRD36BQ8N2N9 1353 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 AK7Q96M32 723 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 PUS7Q96PZ0 661 aaKnown RBP15.1■□□□□ 0.01
USP40-201ENST00000251722 CYP46A1Q9Y6A2 500 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 CDR1P51861 262 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 CCDC69A6NI79 296 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 IFIT1P09914 478 aaKnown RBP15.1■□□□□ 0.01
USP40-201ENST00000251722 CAVIN4Q5BKX8 364 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 DACH1Q9UI36 760 aa15.1■□□□□ 0.01
USP40-201ENST00000251722 MVPQ14764 893 aaKnown RBP15.09■□□□□ 0.01
USP40-201ENST00000251722 KRT28Q7Z3Y7 464 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 SMAP1Q8IYB5 467 aaPredicted RBP15.09■□□□□ 0.01
USP40-201ENST00000251722 NPHP3Q7Z494 1330 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 ZC3H6P61129 1189 aaKnown RBP15.09■□□□□ 0.01
USP40-201ENST00000251722 ODF2Q5BJF6 829 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 DNAI2Q9GZS0 605 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 IDI1Q13907 227 aa15.09■□□□□ 0.01
USP40-201ENST00000251722 CT47A1Q5JQC4 288 aaPredicted RBP15.09■□□□□ 0.01
USP40-201ENST00000251722 IPO4Q8TEX9 1081 aaKnown RBP15.09■□□□□ 0.01
USP40-201ENST00000251722 FMNL2Q96PY5 1086 aa15.08■□□□□ 0.01
USP40-201ENST00000251722 UGGT2Q9NYU1 1516 aa15.08■□□□□ 0.01
USP40-201ENST00000251722 TMPOP42166 694 aaKnown RBP15.08■□□□□ 0
USP40-201ENST00000251722 GIMAP7Q8NHV1 300 aa15.08■□□□□ 0
USP40-201ENST00000251722 RBM28Q9NW13 759 aaKnown RBP15.08■□□□□ 0
USP40-201ENST00000251722 C11orf95C9JLR9 678 aaPredicted RBP15.08■□□□□ 0
USP40-201ENST00000251722 CCP110O43303 1012 aa15.08■□□□□ 0
USP40-201ENST00000251722 NGLY1Q96IV0 654 aa15.08■□□□□ 0
USP40-201ENST00000251722 FILIP1LQ4L180 1135 aa15.08■□□□□ 0
USP40-201ENST00000251722 MYO6Q9UM54 1294 aa15.08■□□□□ 0
USP40-201ENST00000251722 CTR9Q6PD62 1173 aa15.07■□□□□ 0
USP40-201ENST00000251722 IFNL2Q8IZJ0 200 aa15.07■□□□□ 0
USP40-201ENST00000251722 MAPK8IP2Q13387 824 aaPredicted RBP15.07■□□□□ 0
USP40-201ENST00000251722 MYL6BP14649 208 aa15.07■□□□□ 0
USP40-201ENST00000251722 NASPP49321 788 aaPredicted RBP15.07■□□□□ 0
USP40-201ENST00000251722 TIGD1Q96MW7 591 aa15.07■□□□□ 0
USP40-201ENST00000251722 NOS1P29475 1434 aa15.07■□□□□ 0
USP40-201ENST00000251722 H0YHG0 523 aa15.07■□□□□ 0
USP40-201ENST00000251722 RRS1Q15050 365 aaKnown RBP15.07■□□□□ 0
USP40-201ENST00000251722 PPP1R1BQ9UD71 204 aaPredicted RBP15.07■□□□□ 0
USP40-201ENST00000251722 GPATCH8Q9UKJ3 1502 aaKnown RBP15.06■□□□□ 0
USP40-201ENST00000251722 MAGEC2Q9UBF1 373 aaPredicted RBP15.06■□□□□ 0
USP40-201ENST00000251722 STIM1Q13586 685 aa15.06■□□□□ 0
USP40-201ENST00000251722 OFD1O75665 1012 aa15.06■□□□□ 0
USP40-201ENST00000251722 RBM5P52756 815 aaKnown RBP eCLIP15.06■□□□□ 0
USP40-201ENST00000251722 SMARCC1Q92922 1105 aaPredicted RBP15.06■□□□□ 0
USP40-201ENST00000251722 PAIP2Q9BPZ3 127 aaKnown RBP15.06■□□□□ 0
USP40-201ENST00000251722 GTF2A1P52655 376 aaPredicted RBP15.05■□□□□ 0
USP40-201ENST00000251722 TMEM132AQ24JP5 1023 aa15.05■□□□□ 0
USP40-201ENST00000251722 KIF1BPQ96EK5 621 aa15.05■□□□□ 0
USP40-201ENST00000251722 KINO60870 393 aaKnown RBP15.05■□□□□ -0
USP40-201ENST00000251722 CCDC191Q8NCU4 936 aa15.05■□□□□ -0
USP40-201ENST00000251722 UBAC1Q9BSL1 405 aa15.05■□□□□ -0
USP40-201ENST00000251722 PTPRCP08575 1304 aa15.05■□□□□ -0
USP40-201ENST00000251722 SMARCE1Q969G3 411 aa15.05■□□□□ -0
USP40-201ENST00000251722 SRGAP3O43295 1099 aa15.05■□□□□ -0
USP40-201ENST00000251722 SDF4Q9BRK5 362 aa15.05■□□□□ -0
USP40-201ENST00000251722 ADAMTS12P58397 1594 aa15.04■□□□□ -0
USP40-201ENST00000251722 AACSQ86V21 672 aa15.04■□□□□ -0
USP40-201ENST00000251722 LUC7LQ9NQ29 371 aaKnown RBP15.04■□□□□ -0
USP40-201ENST00000251722 RAI14Q9P0K7 980 aa15.04■□□□□ -0
USP40-201ENST00000251722 ZNF526Q8TF50 670 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms