RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CRTC1Q6UUV9 634 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 DPY19L3Q6ZPD9 716 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 LARP4Q71RC2 724 aaKnown RBP eCLIP14.34□□□□□ -0.11
VRK3-217ENST00000599538 CHST14Q8NCH0 376 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 GPR26Q8NDV2 337 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 FAR2Q96K12 515 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 PLEKHG4BQ96PX9 1271 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 ABCG8Q9H221 673 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 ZNF225Q9UK10 706 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 POMPQ9Y244 141 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 HS3ST2Q9Y278 367 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 LINC01553A4QN01 128 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 STX16-NPEPL1H3BU86 382 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 ALDOCP09972 364 aaKnown RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 PTPN2P17706 415 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 LHCGRP22888 699 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 SERPINA4P29622 427 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 MSX2P35548 267 aaPredicted RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 CCNHP51946 323 aaPredicted RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 CCNIQ14094 377 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 CCDC6Q16204 474 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 C18orf21Q32NC0 220 aaPredicted RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 LY6G5CQ5SRR4 150 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 TLDC1Q6P9B6 456 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 Q6ZVU0 165 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 GRASPQ7Z6J2 395 aaPredicted RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 RAB44Q7Z6P3 723 aaPredicted RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.33□□□□□ -0.11
VRK3-217ENST00000599538 CLYBLQ8N0X4 340 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 NAT16Q8N8M0 369 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 HIPK4Q8NE63 616 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 OR9I1Q8NGQ6 314 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 GRIN3AQ8TCU5 1115 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 SORCS1Q8WY21 1168 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 C19orf60Q96EN9 201 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 CIPCQ9C0C6 399 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 ZDHHC6Q9H6R6 413 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 STX18Q9P2W9 335 aaKnown RBP14.33□□□□□ -0.11
VRK3-217ENST00000599538 PPM1HQ9ULR3 514 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 WNT6Q9Y6F9 365 aa14.33□□□□□ -0.11
VRK3-217ENST00000599538 REV3LO60673 3130 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 PIP5K1BO14986 540 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 UBDO15205 165 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 RPS17P08708 135 aaKnown RBP14.33□□□□□ -0.12
VRK3-217ENST00000599538 CHRM1P11229 460 aaPredicted RBP14.33□□□□□ -0.12
VRK3-217ENST00000599538 TYRP14679 529 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 MTTPP55157 894 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 RPL26P61254 145 aaKnown RBP14.33□□□□□ -0.12
VRK3-217ENST00000599538 SNRPD1P62314 119 aaKnown RBP14.33□□□□□ -0.12
VRK3-217ENST00000599538 SLC34A1Q06495 639 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 GEN1Q17RS7 908 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 FBXW8Q8N3Y1 598 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 DCBLD1Q8N8Z6 715 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 KYQ8NBH2 561 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 TWIST2Q8WVJ9 160 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 IRF7Q92985 503 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 TMEM106CQ9BVX2 250 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 AKTIPQ9H8T0 292 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 MCM8Q9UJA3 840 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 LZTS1Q9Y250 596 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 BTRCQ9Y297 605 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 DHRS7Q9Y394 339 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 TIMM22Q9Y584 194 aa14.33□□□□□ -0.12
VRK3-217ENST00000599538 AZIN1O14977 448 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 PFDN6O15212 129 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 SLC22A2O15244 555 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 KLK8O60259 260 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 UGT2B4P06133 528 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 FGF4P08620 206 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 PABPC1P11940 636 aaKnown RBP14.32□□□□□ -0.12
VRK3-217ENST00000599538 ENO3P13929 434 aaPredicted RBP14.32□□□□□ -0.12
VRK3-217ENST00000599538 CD9P21926 228 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 ADSLP30566 484 aaPredicted RBP14.32□□□□□ -0.12
VRK3-217ENST00000599538 MAPK8P45983 427 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 LRRC66Q68CR7 880 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 RNF111Q6ZNA4 994 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 SNX20Q7Z614 316 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 ADIPOR2Q86V24 386 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 AFAP1L2Q8N4X5 818 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 RNF148Q8N7C7 305 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 PYDC1Q8WXC3 89 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 ECHDC3Q96DC8 303 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 SLC45A3Q96JT2 553 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 LRRC3BQ96PB8 259 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 TTC1Q99614 292 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 SUV39H2Q9H5I1 410 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 SPHK2Q9NRA0 654 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 CCDC167Q9P0B6 97 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 ZNF106Q9H2Y7 1883 aaKnown RBP14.32□□□□□ -0.12
VRK3-217ENST00000599538 TRBV5-4A0A0C4DH59 114 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 GLYATL1P3A0A0U1RQE8 302 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 CFLARO15519 480 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 LINC00032P0C843 101 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 GTF2A1P52655 376 aaPredicted RBP14.32□□□□□ -0.12
VRK3-217ENST00000599538 PKNOX1P55347 436 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 PTSQ03393 145 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 GRB7Q14451 532 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 TGFBIQ15582 683 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 ZNF77Q15935 545 aa14.32□□□□□ -0.12
VRK3-217ENST00000599538 PRSS36Q5K4E3 855 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms