RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 C10orf88Q9H8K7 445 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 SARS2Q9NP81 518 aaKnown RBP10.1□□□□□ -0.79
LDLR-214ENST00000560628 SCHIP1Q9P0W5 487 aaPredicted RBP10.1□□□□□ -0.79
LDLR-214ENST00000560628 CPNE7Q9UBL6 633 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 KLHL3Q9UH77 587 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 FAM153AQ9UHL3 310 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 PCDHA13Q9Y5I0 950 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 B3GALT1Q9Y5Z6 326 aa10.1□□□□□ -0.79
LDLR-214ENST00000560628 A6NCN8 305 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 PSTPIP1O43586 416 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 BUD23O43709 281 aaKnown RBP10.09□□□□□ -0.79
LDLR-214ENST00000560628 DUX1O43812 170 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 F3P13726 295 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 PLA2G2AP14555 144 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 NFKB1P19838 968 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 CHRNA4P43681 627 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 MARCKSL1P49006 195 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 SEPT7Q16181 437 aaKnown RBP10.09□□□□□ -0.79
LDLR-214ENST00000560628 LINC00303Q3SY05 128 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 KHDC1Q4VXA5 237 aaKnown RBP10.09□□□□□ -0.79
LDLR-214ENST00000560628 TFDP3Q5H9I0 405 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 SIRPB2Q5JXA9 342 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 ANKS6Q68DC2 871 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 KDELC1Q6UW63 502 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 PHYKPLQ8IUZ5 450 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 CCDC50Q8IVM0 306 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 RCOR2Q8IZ40 523 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 ZNF567Q8N184 647 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 KRT35Q92764 455 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 EXTL1Q92935 676 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 SH3KBP1Q96B97 665 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 PLEKHG4BQ96PX9 1271 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 CTRCQ99895 268 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 HERPUD2Q9BSE4 406 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 STN1Q9H668 368 aaKnown RBP10.09□□□□□ -0.79
LDLR-214ENST00000560628 RAD18Q9NS91 495 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 KLHL8Q9P2G9 620 aaPredicted RBP10.09□□□□□ -0.79
LDLR-214ENST00000560628 PDP2Q9P2J9 529 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 TRIM10Q9UDY6 481 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 TMPRSS11EQ9UL52 423 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 DNAJC16Q9Y2G8 782 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 PCDHGA4Q9Y5G9 962 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 ADGRG1Q9Y653 693 aa10.09□□□□□ -0.79
LDLR-214ENST00000560628 SCN8AQ9UQD0 1980 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 hCG_1818297A0A087WSY0 165 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 KIR2DS5A0A0G2JLQ3 304 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 A0A0G2JNG1 304 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 LOC285095A0A1B0GVY8 99 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 OR5K4A6NMS3 321 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 PDZK1P1A8MUH7 402 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 STMND1H3BQB6 276 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 KIR2DS3K7RE56 304 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 CHUKO15111 745 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 KMOO15229 486 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A9O60656 530 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 CDK14O94921 469 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 SLC2A4P14672 509 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ZNF7P17097 686 aaPredicted RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 TYRP1P17643 537 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A6P19224 532 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A1P22309 533 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A4P22310 534 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 RPL10P27635 214 aaKnown RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 CD82P27701 267 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A3P35503 534 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 HADHBP55084 474 aaKnown RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 DCDC1P59894 354 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 KIR2DS5Q14953 304 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 SPA17Q15506 151 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 CHRNA6Q15825 494 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 SLC14A2Q15849 920 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 INSCQ1MX18 579 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ATP13A5Q4VNC0 1218 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 DCAF12Q5T6F0 453 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 WDR74Q6RFH5 385 aaPredicted RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 ARHGAP22Q7Z5H3 698 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 LRRTM4Q86VH4 590 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ZNF547Q8IVP9 402 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 KATNAL2Q8IYT4 538 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 TTC30BQ8N4P2 665 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ZSCAN1Q8NBB4 408 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 CCDC112Q8NEF3 446 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 IPMKQ8NFU5 416 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 GDAP1Q8TB36 358 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 NKD1Q969G9 470 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 RNF31Q96EP0 1072 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 MED8Q96G25 268 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 OXNAD1Q96HP4 312 aaPredicted RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 MRGPRX2Q96LB1 330 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ARHGAP9Q9BRR9 750 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 B3GNT4Q9C0J1 378 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A7Q9HAW7 530 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A10Q9HAW8 530 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 UGT1A8Q9HAW9 530 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 IL26Q9NPH9 171 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 ZNF624Q9P2J8 865 aaPredicted RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 PCDHGA3Q9Y5H0 932 aa10.08□□□□□ -0.8
LDLR-214ENST00000560628 SMG1Q96Q15 3661 aaKnown RBP10.08□□□□□ -0.8
LDLR-214ENST00000560628 B4E171 279 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms