RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 TMIGD2Q96BF3 282 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 UROC1Q96N76 676 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 CHCHD6Q9BRQ6 235 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 GPR88Q9GZN0 384 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 APOBEC3GQ9HC16 384 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 MKS1Q9NXB0 559 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF224Q9NZL3 707 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ARHGAP28Q9P2N2 729 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 FAM50BQ9Y247 325 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 GIT1Q9Y2X7 761 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 MGAT4DA6NG13 374 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 C9JVG2 144 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 RGS20O76081 388 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 AP2A1O95782 977 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 TFAP2AP05549 437 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 RAP2AP10114 183 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 GALNT12Q8IXK2 581 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 NETO2Q8NC67 525 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 EIF2B3Q9NR50 452 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 RCOR3Q9P2K3 495 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ATRNL1Q5VV63 1379 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ARFGEF2Q9Y6D5 1785 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 DHX15O43143 795 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 CD36P16671 472 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 FMO4P31512 558 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 CHI3L1P36222 383 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ATP5C1P36542 298 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 GRM5P41594 1212 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 IL2P60568 153 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 TMPRSS11AQ6ZMR5 421 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 USP43Q70EL4 1123 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 IKBIPQ70UQ0 350 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 C11orf74Q86VG3 221 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 OOSP2Q86WS3 158 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ASCC1Q8N9N2 400 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 PCDH19Q8TAB3 1148 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 LMO3Q8TAP4 145 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 FCGR1BQ92637 280 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 GINS4Q9BRT9 223 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 HERC2P3Q9BVR0 1158 aa11.18□□□□□ -0.62
TCOF1-211ENST00000513346 MRPL17Q9NRX2 175 aaKnown RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 WRAP73Q9P2S5 460 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF701M0R085 212 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 AURKAO14965 403 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 GUCY1B2O75343 617 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 GUCA1CO95843 209 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 IL1R2P27930 398 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 RFTN1Q14699 578 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 DCDC5Q6ZRR9 648 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 TFAP2BQ92481 460 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 FEM1CQ96JP0 617 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 B3GALT6Q96L58 329 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 Q96MT0 163 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 OSBPL10Q9BXB5 764 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 NEK6Q9HC98 313 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 THG1LQ9NWX6 298 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 SLC17A6Q9P2U8 582 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 DNAJB9Q9UBS3 223 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 OR12D3Q9UGF7 316 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF112Q9UJU3 913 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 CEPT1Q9Y6K0 416 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ARPC2O15144 300 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 CLIC3O95833 236 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 S100A9P06702 114 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 CEACAM7Q14002 265 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 CNSTQ6PJW8 725 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 PRR23CQ6ZRP0 262 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 IFNL1Q8IU54 200 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 C12orf29Q8N999 325 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 HNRNPABQ99729 332 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 DCSTAMPQ9H295 470 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 FAM105AQ9NUU6 356 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ACTR3BQ9P1U1 418 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 SLC45A1Q9Y2W3 748 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 A0A0G2JLL6 359 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 GPR25O00155 361 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 PRLP01236 227 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 RPLP0P05388 317 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 MTHFD1P11586 935 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 RPL9P32969 192 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 MYBPC1Q00872 1141 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 PRRT2Q7Z6L0 340 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 EPHX4Q8IUS5 362 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 SLC44A2Q8IWA5 706 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 DAW1Q8N136 415 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 FIBCD1Q8N539 461 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 WDR36Q8NI36 951 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 C18orf25Q96B23 403 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 AGAP2Q99490 1192 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 KCNK13Q9HB14 408 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ANKHQ9HCJ1 492 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 TOR4AQ9NXH8 423 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 TBC1D14Q9P2M4 693 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 MBD2Q9UBB5 411 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ZDHHC2Q9UIJ5 367 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF214Q9UL59 606 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 SAMD4AQ9UPU9 718 aaKnown RBP11.17□□□□□ -0.62
TCOF1-211ENST00000513346 MFHAS1Q9Y4C4 1052 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 DUOX1Q9NRD9 1551 aa11.17□□□□□ -0.62
TCOF1-211ENST00000513346 ELOVL7A1L3X0 281 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms