RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 FBXO39Q8N4B4 442 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 STAG3L4Q8TBR4 150 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 LZICQ8WZA0 190 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 GFM2Q969S9 779 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 C8orf48Q96LL4 319 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 FAM193BQ96PV7 902 aaPredicted RBP16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 NUSAP1Q9BXS6 441 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 LIN28AQ9H9Z2 209 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 TMEM39AQ9NV64 488 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 AIG1Q9NVV5 245 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 GALNT8Q9NY28 637 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 IKZF3Q9UKT9 509 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 LRFN2Q9ULH4 789 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 GMEB1Q9Y692 573 aa16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 OAS3Q9Y6K5 1087 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-203ENST00000439316 TPST1O60507 370 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 PRAMEF11O60813 436 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 DIO3P55073 304 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 NFYCQ13952 458 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 TRIP4Q15650 581 aaPredicted RBP16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 TBC1D25Q3MII6 688 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 ZBED5Q49AG3 693 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 SETMARQ53H47 684 aaPredicted RBP16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 IL31Q6EBC2 164 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 MUC3BQ9H195 1237 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 SYTL2Q9HCH5 934 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 OAZ3Q9UMX2 235 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 MED16Q9Y2X0 877 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 PRG3Q9Y2Y8 225 aaPredicted RBP16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 GBF1Q92538 1859 aa16.27■□□□□ 0.2
CLCNKA-203ENST00000439316 LCHNA4D1U4 455 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 ECI2O75521 394 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 EEDO75530 441 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 PARNO95453 639 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 RFC2P35250 354 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 ACVRL1P37023 503 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 ESRRGP62508 458 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 DDR2Q16832 855 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 LRRC26Q2I0M4 334 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 XKR7Q5GH72 579 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 ANKS6Q68DC2 871 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 CIR1Q86X95 450 aaPredicted RBP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 CRIPAKQ8N1N5 446 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 PAPD5Q8NDF8 572 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 FUBP3Q96I24 572 aaKnown RBP eCLIP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 CASD1Q96PB1 797 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 TRIB3Q96RU7 358 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 C1QTNF3Q9BXJ4 246 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 ALG2Q9H553 416 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 C11orf49Q9H6J7 331 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 PDFQ9HBH1 243 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 CD320Q9NPF0 282 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 SEMA4BQ9NPR2 832 aaPredicted RBP16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 RNF112Q9ULX5 631 aa16.27■□□□□ 0.19
CLCNKA-203ENST00000439316 RNF103-CHMP3A0A140T963 221 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 DYTNA2CJ06 578 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 RHOBTB1O94844 696 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CYBBP04839 570 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 PYGLP06737 847 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 PRSS56P0CW18 603 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 MAPKAPK2P49137 400 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ZNF140P52738 457 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 KCNK10P57789 538 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 YBEYP58557 167 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ZNF235Q14590 738 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CYP51A1Q16850 503 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 RABL3Q5HYI8 236 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ALG1LQ6GMV1 187 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 PAQR3Q6TCH7 311 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 EFL1Q7Z2Z2 1120 aaKnown RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 GPR180Q86V85 440 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ISOC1Q96CN7 298 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CDKN2AIPNLQ96HQ2 116 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ZNF599Q96NL3 588 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 TRIM8Q9BZR9 551 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 BRINP2Q9C0B6 783 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 IL37Q9NZH6 218 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 STX16O14662 325 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 INPP4BO15327 924 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 KLK8O60259 260 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CRCPO75575 148 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 OAZ2O95190 189 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 NDST3O95803 873 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 IGLV3-27P01718 113 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CLTBP09497 229 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 PIRTP0C851 137 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 MTHFD1P11586 935 aaKnown RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 EEFSECP57772 596 aaKnown RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 NAA20P61599 178 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 ECT2LQ008S8 904 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 LIPEQ05469 1076 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 MYBPC3Q14896 1274 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 CLVS1Q8IUQ0 354 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 TEX37Q96LM6 180 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 RPRD1AQ96P16 312 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 KCTD14Q9BQ13 255 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 NLE1Q9NVX2 485 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 TAS2R13Q9NYV9 303 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 HCSTQ9UBK5 93 aa16.26■□□□□ 0.19
CLCNKA-203ENST00000439316 UBA6A0AVT1 1052 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms