RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SQORQ9Y6N5 450 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 SCN10AQ9Y5Y9 1956 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 TDRD15B5MCY1 1934 aaKnown RBP13.27□□□□□ -0.28
VPS54-203ENST00000409558 ZNF840PA6NDX5 716 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 SOCS2O14508 198 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 ACOT8O14734 319 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 ZNF23P17027 643 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 FDXRP22570 491 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 PRDX6P30041 224 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 HMOX2P30519 316 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 HSPA14Q0VDF9 509 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 MAPRE2Q15555 327 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 AFMIDQ63HM1 303 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 LARP4Q71RC2 724 aaKnown RBP eCLIP13.27□□□□□ -0.285e-6■■■■□ 23.6
VPS54-203ENST00000409558 CACUL1Q86Y37 369 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 LRRC43Q8N309 656 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 PARP8Q8N3A8 854 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 FUBP1Q96AE4 644 aaKnown RBP13.27□□□□□ -0.28
VPS54-203ENST00000409558 ASIC4Q96FT7 647 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 MEAF6Q9HAF1 191 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 OLA1Q9NTK5 396 aaKnown RBP13.27□□□□□ -0.28
VPS54-203ENST00000409558 C6orf203Q9P0P8 240 aaPredicted RBP13.27□□□□□ -0.28
VPS54-203ENST00000409558 MAP10Q9P2G4 905 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 TRIM17Q9Y577 477 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 U3KQV3 271 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 H3BSA7 217 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 PRAMEF1O95521 474 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 PRLP01236 227 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 HSPA8P11142 646 aaKnown RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 EEF1B2P24534 225 aaKnown RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 PTGR1Q14914 329 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 TMEM214Q6NUQ4 689 aaKnown RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 TSPAN33Q86UF1 283 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 LMNTD1Q8N9Z9 388 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 THUMPD3Q9BV44 507 aaKnown RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 SPATA16Q9BXB7 569 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 SRRDQ9UH36 339 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 CRLS1Q9UJA2 301 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 VPS4AQ9UN37 437 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 CCDC154A6NI56 674 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 PYGLP06737 847 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 FAM58BPP0C7Q3 252 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 HK3P52790 923 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 IST1P53990 364 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 RPL38P63173 70 aaKnown RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 MYBPC1Q00872 1141 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 OGFRL1Q5TC84 451 aaPredicted RBP13.27□□□□□ -0.29
VPS54-203ENST00000409558 RNF175Q8N4F7 328 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 FBXO30Q8TB52 745 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 FIG4Q92562 907 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 SEPT8Q92599 483 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 PBXIP1Q96AQ6 731 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 TMEM169Q96HH4 297 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 FEM1CQ96JP0 617 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 SYTL2Q9HCH5 934 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 ATP11BQ9Y2G3 1177 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 CPQQ9Y646 472 aa13.27□□□□□ -0.29
VPS54-203ENST00000409558 SDK1Q7Z5N4 2213 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 OR6C75A6NL08 312 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 SYN3O14994 580 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 B3GALT4O96024 378 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 NEK2P51955 445 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ARF5P84085 180 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 LAPTM5Q13571 262 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 GSTA3Q16772 222 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ANKS3Q6ZW76 656 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 OR2T11Q8NH01 316 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 FBXL20Q96IG2 436 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ARNT2Q9HBZ2 717 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 NYNRINQ9P2P1 1898 aaKnown RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 SZT2Q5T011 3432 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 UNCXA6NJT0 531 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 SLC25A14O95258 325 aaPredicted RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 ACRP10323 421 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 HK2P52789 917 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 BOP1Q14137 746 aaKnown RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 PELI3Q8N2H9 469 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 NCLNQ969V3 563 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ASB9Q96DX5 294 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 AURKBQ96GD4 344 aaPredicted RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 ATOH8Q96SQ7 321 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 KCTD14Q9BQ13 255 aaPredicted RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 MTG2Q9H4K7 406 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 LTB4R2Q9NPC1 389 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 OAZ3Q9UMX2 235 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 YBEYP58557 167 aaPredicted RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 ZNF33AQ06730 810 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 LCP2Q13094 533 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 SAMD4BQ5PRF9 694 aaKnown RBP13.26□□□□□ -0.29
VPS54-203ENST00000409558 UGT2A3Q6UWM9 527 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 SLC15A3Q8IY34 581 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 HS6ST3Q8IZP7 471 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ADGRG2Q8IZP9 1017 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 LKAAEAR1Q8TD35 194 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 ULK4Q96C45 1275 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 CLPBQ9H078 707 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 HIPK3Q9H422 1215 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 WWOXQ9NZC7 414 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 MYLKQ15746 1914 aa13.26□□□□□ -0.29
VPS54-203ENST00000409558 NR4A1P22736 598 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms