RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PDGFRLQ15198 375 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 C18orf21Q32NC0 220 aaPredicted RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 C2orf27AQ580R0 203 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 AARS2Q5JTZ9 985 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 YTHDF3Q7Z739 585 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 CHPFQ8IZ52 775 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 NXPE1Q8N323 547 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 PTGR2Q8N8N7 351 aaPredicted RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 PPM1EQ8WY54 764 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.34■□□□□ 0.21
USP4-201ENST00000265560 LYSMD1Q96S90 227 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 RIOK2Q9BVS4 552 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 P2RY12Q9H244 342 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 RNF112Q9ULX5 631 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 TRPM6Q9BX84 2022 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 WDR87Q6ZQQ6 2873 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 KRT87PA6NCN2 255 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 FCHO1O14526 889 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 SKAP2O75563 359 aaPredicted RBP16.33■□□□□ 0.21
USP4-201ENST00000265560 GFAPP14136 432 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 B4GALNT1Q00973 533 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 CREB5Q02930 508 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 ACOX1Q15067 660 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 AAK1Q2M2I8 961 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 HNRNPA1L2Q32P51 320 aaKnown RBP16.33■□□□□ 0.21
USP4-201ENST00000265560 KHDC1Q4VXA5 237 aaKnown RBP16.33■□□□□ 0.21
USP4-201ENST00000265560 IER5LQ5T953 404 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 BRAT1Q6PJG6 821 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 CPA6Q8N4T0 437 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 RAB3IL1Q8TBN0 382 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 SREK1Q8WXA9 508 aaKnown RBP16.33■□□□□ 0.21
USP4-201ENST00000265560 ARRDC3Q96B67 414 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 DRC3Q9H069 523 aa16.33■□□□□ 0.21
USP4-201ENST00000265560 TSPAN12O95859 305 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 RBP1P09455 135 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 MTHFD2P13995 350 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 CD1EP15812 388 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 ZNF7P17097 686 aaPredicted RBP16.33■□□□□ 0.2
USP4-201ENST00000265560 EPHA3P29320 983 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 AKT1P31749 480 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 CLCN7P51798 805 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 TXNDC11Q6PKC3 985 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 PHTF2Q8N3S3 785 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 FAM129BQ96TA1 746 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 ILKAPQ9H0C8 392 aaPredicted RBP16.33■□□□□ 0.2
USP4-201ENST00000265560 TRPV4Q9HBA0 871 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 ARL8BQ9NVJ2 186 aa16.33■□□□□ 0.2
USP4-201ENST00000265560 OAS3Q9Y6K5 1087 aaKnown RBP16.33■□□□□ 0.2
USP4-201ENST00000265560 A0A1B0GTL3 188 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 E9PBE3 544 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 KLHL41O60662 606 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SRPRAP08240 638 aaKnown RBP16.32■□□□□ 0.2
USP4-201ENST00000265560 TIE1P35590 1138 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 PSMD8P48556 350 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 IDH3AP50213 366 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 RCN2Q14257 317 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 GALNTL6Q49A17 601 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SH2D4BQ5SQS7 431 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 FBXL19Q6PCT2 694 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 TRIM74Q86UV6 250 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 WFIKKN2Q8TEU8 576 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SUSD6Q92537 303 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 OR2AG2A6NM03 316 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ZNF195O14628 629 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 PFDN6O15212 129 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 DCTN3O75935 186 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 GUCA1CO95843 209 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ESR1P03372 595 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 T-ENOLP0DO92 83 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SUOXP51687 545 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 CLEC6AQ6EIG7 209 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 RDH11Q8TC12 318 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 MARK4Q96L34 752 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 OR52B2Q96RD2 323 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 KCNK4Q9NYG8 393 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 PPIL1Q9Y3C6 166 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ASB1Q9Y576 335 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 MTCH2Q9Y6C9 303 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 LAMA1P25391 3075 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 H0YHG0 523 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ECI2O75521 394 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ASLP04424 464 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 PYGLP06737 847 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ELFN1P0C7U0 828 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 HOXB8P17481 243 aaPredicted RBP16.32■□□□□ 0.2
USP4-201ENST00000265560 NCF2P19878 526 aaPredicted RBP16.32■□□□□ 0.2
USP4-201ENST00000265560 GALK1P51570 392 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 IL2P60568 153 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 NCALDP61601 193 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 KCNJ2P63252 427 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 BNIP1Q12981 228 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 ACSBG2Q5FVE4 666 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 RBFAQ8N0V3 343 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SLC6A17Q9H1V8 727 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 FAM83DQ9H4H8 585 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SYTL2Q9HCH5 934 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 COMMD10Q9Y6G5 202 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 LRRK1Q38SD2 2015 aa16.32■□□□□ 0.2
USP4-201ENST00000265560 SPEGQ15772 3267 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 PRR23AA6NEV1 266 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms