RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 SLC39A10Q9ULF5 831 aa11.22□□□□□ -0.61
VMP1-207ENST00000588131 PRSS21Q9Y6M0 314 aa11.22□□□□□ -0.61
VMP1-207ENST00000588131 FAM47DPA6NHR8 397 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PHGDHO43175 533 aaKnown RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 BRAFP15056 766 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 KRT4P19013 534 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 RPS9P46781 194 aaKnown RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 SERPINB8P50452 374 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 CDKN2DP55273 166 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 TAS2R39P59534 338 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PPP2CBP62714 309 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PPP2CAP67775 309 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 B4GALNT1Q00973 533 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 TIAL1Q01085 375 aaKnown RBP eCLIP11.21□□□□□ -0.61
VMP1-207ENST00000588131 SLC18A2Q05940 514 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SIGLEC14Q08ET2 396 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 MTAPQ13126 283 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 DNAJC3Q13217 504 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ZNF460Q14592 562 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 USP10Q14694 798 aaKnown RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 TMEM259Q4ZIN3 620 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PPM1JQ5JR12 505 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 TJAP1Q5JTD0 557 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ZNF648Q5T619 568 aaPredicted RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 GPRC6AQ5T6X5 926 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 RNF187Q5TA31 235 aaPredicted RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 LYPLAL1Q5VWZ2 237 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 KIAA1161Q6NSJ0 714 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 MTERF4Q7Z6M4 381 aaKnown RBP11.21□□□□□ -0.61
VMP1-207ENST00000588131 KRT222Q8N1A0 295 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SPEM1Q8N4L4 309 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PLA2G15Q8NCC3 412 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ULK4Q96C45 1275 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 BIRC8Q96P09 236 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SMC6Q96SB8 1091 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SELENOSQ9BQE4 189 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ZSCAN5AQ9BUG6 496 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 TPSD1Q9BZJ3 242 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 CDH19Q9H159 772 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PREBQ9HCU5 417 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 PCMTD2Q9NV79 361 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SMOXQ9NWM0 555 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ZDHHC3Q9NYG2 299 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SENP1Q9P0U3 644 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 CYP8B1Q9UNU6 501 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 MED16Q9Y2X0 877 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 SIT1Q9Y3P8 196 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 ACTL7BQ9Y614 415 aa11.21□□□□□ -0.61
VMP1-207ENST00000588131 IGLV3-16A0A075B6K0 115 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3DA0A087WVF3 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3IA0A087WXS9 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3EA0A087X179 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3KA0A087X1G2 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3FA6NER0 549 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3LB9A6J9 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PFDN6O15212 129 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 RAD51BO15315 384 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 POLR3GO15318 223 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 INPP4BO15327 924 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PI15O43692 258 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TYROBPO43914 113 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 NIPSNAP2O75323 286 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 MTX2O75431 263 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TOP3BO95985 862 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 IGLV3-19P01714 112 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PCCBP05166 539 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3HP0C7X1 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PKMP14618 531 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 NR1D1P20393 614 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 FDXRP22570 491 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TYK2P29597 1187 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 MAT2AP31153 395 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 PTGER3P43115 390 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 GPR1P46091 355 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PXNP49023 591 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 PPP2R2AP63151 447 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 RPS21P63220 83 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 IRF9Q00978 393 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 DPTQ07507 201 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 SFSWAPQ12872 951 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 PDE1CQ14123 709 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 MPP2Q14168 576 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 ITIH4Q14624 930 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 AGERQ15109 404 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 ZKSCAN8Q15776 578 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 WSCD2Q2TBF2 565 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 KHDC1Q4VXA5 237 aaKnown RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 SETMARQ53H47 684 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3GQ6DHY5 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 RAET1GQ6H3X3 334 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3CQ6IPX1 549 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 FAM45BPQ6NSW5 357 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 KDM7AQ6ZMT4 941 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 PIM3Q86V86 326 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 NLRP8Q86W28 1048 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 HORMAD1Q86X24 394 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TBC1D3Q8IZP1 549 aaPredicted RBP11.2□□□□□ -0.62
VMP1-207ENST00000588131 RBFAQ8N0V3 343 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 BANPQ8N9N5 519 aa11.2□□□□□ -0.62
VMP1-207ENST00000588131 TP53I13Q8NBR0 393 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms