RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ZG16O60844 167 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 CLDN14O95500 239 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ADAP00813 363 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 SERPINC1P01008 464 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 IGKV5-2P06315 115 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 CMA1P23946 247 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 TTKP33981 857 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 PIGAP37287 484 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ZNF132P52740 706 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 TUBB4BP68371 445 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 POU5F1Q01860 360 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ZBTB17Q13105 803 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 DMP1Q13316 513 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 GCKRQ14397 625 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 HIST2H2BCQ6DN03 193 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 NAPEPLDQ6IQ20 393 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 GJB7Q6PEY0 223 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 CCDC73Q6ZRK6 1079 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 C11orf57Q6ZUT1 292 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 FOXL2NBQ6ZUU3 175 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 MARK2Q7KZI7 788 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ZNF589Q86UQ0 364 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 CEP57L1Q8IYX8 460 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 LINC00301Q8NCQ3 95 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 FEM1CQ96JP0 617 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 PPM1MQ96MI6 270 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 LRFN5Q96NI6 719 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 USP28Q96RU2 1077 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 FSD1Q9BTV5 496 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 BOLA2Q9H3K6 86 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 GOLPH3LQ9H4A5 285 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 BICC1Q9H694 974 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 EBF2Q9HAK2 575 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 SCRT2Q9NQ03 307 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 TUBE1Q9UJT0 475 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ZNF215Q9UL58 517 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 GPR52Q9Y2T5 361 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 CLDN16Q9Y5I7 305 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 PHLPP2Q6ZVD8 1323 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 SH3TC1Q8TE82 1336 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 PLEKHG2Q9H7P9 1386 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 ADAMTS7Q9UKP4 1686 aa4.09□□□□□ -1.76
SMCHD1-208ENST00000583344 CPED1A4D0V7 1026 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 RRN3P2A6NIE6 340 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 KINO60870 393 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 CRYAAP02489 173 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 CSTBP04080 98 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 SERPINB2P05120 415 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 LINC00271P0C7V0 271 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TFPIP10646 304 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 FDPSP14324 419 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 KCNA5P22460 613 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 CENPAP49450 140 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TPM4P67936 248 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 NEXNQ0ZGT2 675 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TROAPQ12815 778 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TUBB2AQ13885 445 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TOMM20Q15388 145 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TAF12Q16514 161 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TIGD6Q17RP2 521 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TANGO2Q6ICL3 276 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 ARMCX5Q6P1M9 558 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TRIM65Q6PJ69 517 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 SHFQ7M4L6 423 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 SFTPA2Q8IWL1 248 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 CIARTQ8N365 385 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 WDR19Q8NEZ3 1342 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 KCNG4Q8TDN1 519 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 LRRC8CQ8TDW0 803 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 PALLDQ8WX93 1383 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 KAT6BQ8WYB5 2073 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 MRPS27Q92552 414 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 RBM17Q96I25 401 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 MPHOSPH8Q99549 860 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 SDF4Q9BRK5 362 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 TUBB2BQ9BVA1 445 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF446Q9NWS9 450 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 ANKRD10Q9NXR5 420 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 PSD3Q9NYI0 1048 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 SMARCAL1Q9NZC9 954 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.08□□□□□ -1.762e-9■□□□□ 10.3
SMCHD1-208ENST00000583344 USP16Q9Y5T5 823 aa4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 V9GYY5 206 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-208ENST00000583344 RGPD8O14715 1765 aaPredicted RBP4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 NFAT5O94916 1531 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF609O15014 1411 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 NEDD4P46934 1319 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 GOLGA6L9A6NEM1 432 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 E7EWF7 191 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 NCAM2O15394 837 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 HSPA12AO43301 675 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 DHX16O60231 1041 aaKnown RBP4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 MBD4O95243 580 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 PYGLP06737 847 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 CLCN3P51790 818 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 PHEXP78562 749 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 C1orf141Q5JVX7 400 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 CCDC158Q5M9N0 1113 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 FAAH2Q6GMR7 532 aa4.07□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF530Q6P9A1 599 aaPredicted RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms