RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RNF112Q9ULX5 631 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 FNDC1Q4ZHG4 1894 aaPredicted RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 C17orf102A2RUQ5 167 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 TRIM64A6NGJ6 449 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 C1RP00736 705 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 ATXN1LP0C7T5 689 aaKnown RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 ODC1P11926 461 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 DCKP27707 260 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 C21orf59P57076 290 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 OR4D2P58180 307 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 AGMOQ6ZNB7 445 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 FBXO39Q8N4B4 442 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 BPIFB6Q8NFQ5 453 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 BIRC7Q96CA5 298 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 FANCEQ9HB96 536 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 PKD2L2Q9NZM6 624 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 FNDC3AQ9Y2H6 1198 aaKnown RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 CCDC154A6NI56 674 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ZNF701M0R085 212 aaPredicted RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 CDC7O00311 574 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 PAPSS2O95340 614 aaPredicted RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 MATN4O95460 622 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 NR4A1P22736 598 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 FMO4P31512 558 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ARL1P40616 181 aaPredicted RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 YWHAHQ04917 246 aaPredicted RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 LCP2Q13094 533 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 FSCN1Q16658 493 aaKnown RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 NANOGP8Q6NSW7 305 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ITIH5Q86UX2 942 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 PLEKHA8Q96JA3 519 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 SEMA3CQ99985 751 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ACBD6Q9BR61 282 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 NANOGQ9H9S0 305 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 CD320Q9NPF0 282 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 PLXNB2O15031 1838 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 SNAP91O60641 907 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 KCNH1O95259 989 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 HRH2P25021 359 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 MAP4P27816 1152 aaKnown RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 SLC26A3P40879 764 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 GNA12Q03113 381 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 GRB14Q14449 540 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ANKRD26P1Q6NSI1 321 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 SLC2A7Q6PXP3 512 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 METTL23Q86XA0 190 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 TRIM54Q9BYV2 358 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 ARMC7Q9H6L4 198 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 TSR3Q9UJK0 312 aaKnown RBP13.12□□□□□ -0.31
CLN3-210ENST00000563874 MIA3Q5JRA6 1907 aa13.12□□□□□ -0.31
CLN3-210ENST00000563874 TBX18O95935 607 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 HMBSP08397 361 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 FCGR1AP12314 374 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 BMXP51813 675 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 RCAN2Q14206 197 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 AAK1Q2M2I8 961 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 OVOS1Q6IE37 1185 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 OR2T11Q8NH01 316 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ARRDC2Q8TBH0 407 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 GPR152Q8TDT2 470 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 PPM1MQ96MI6 270 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CDK15Q96Q40 435 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ADNPQ9H2P0 1102 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 GALPQ9UBC7 116 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SH3GLB1Q9Y371 365 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CORINQ9Y5Q5 1042 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ACTL7AQ9Y615 435 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CCL15-CCL14A0A0B4J2E2 113 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 MUSKO15146 869 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ECI2O75521 394 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SLC22A3O75751 556 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 RSL1D1O76021 490 aaKnown RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 RHOBTB1O94844 696 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ALBP02768 609 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 TCF3P15923 654 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 IL12AP29459 219 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SHMT2P34897 504 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ZFP36L2P47974 494 aaKnown RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 MTPNP58546 118 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CCL15Q16663 113 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ZNF829Q3KNS6 432 aaPredicted RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 SLC44A4Q53GD3 710 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 LDLRAP1Q5SW96 308 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 MRNIPQ6NTE8 343 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SYVN1Q86TM6 617 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 TBC1D21Q8IYX1 336 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ZNF420Q8TAQ5 688 aaPredicted RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 BORCS5Q969J3 196 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ACDQ96AP0 544 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SMIM14Q96QK8 99 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ING2Q9H160 280 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 INTS10Q9NVR2 710 aaKnown RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 ZNF225Q9UK10 706 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ASB1Q9Y576 335 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 NPEPPSL1A6NEC2 478 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 GPR15P49685 360 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 IST1P53990 364 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CBX3Q13185 183 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 TGFBIQ15582 683 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 FAM117BQ6P1L5 589 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms