RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 LCHNA4D1U4 455 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 AZIN1O14977 448 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 CCL16O15467 120 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 DNAJA2O60884 412 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 VPS26AO75436 327 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 FGF18O76093 207 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TSPAN12O95859 305 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 CLTBP09497 229 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 XIAPP98170 497 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 LMAN2Q12907 356 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 SFT2D3Q587I9 215 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TSPAN33Q86UF1 283 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 KBTBD6Q86V97 674 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 ZSWIM9Q86XI8 627 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 AFAP1L2Q8N4X5 818 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 CD200R1Q8TD46 325 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 GDPD5Q8WTR4 605 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 EBF3Q9H4W6 596 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TFB2MQ9H5Q4 396 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 IL17CQ9P0M4 197 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 PKP3Q9Y446 797 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 ZNF711Q9Y462 761 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 KERAO60938 352 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 CRCPO75575 148 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 GUCA1CO95843 209 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 ZCCHC18P0CG32 403 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TTPAP49638 278 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 PTK2BQ14289 1009 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 VPS26BQ4G0F5 336 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 HABP4Q5JVS0 413 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 DGKKQ5KSL6 1271 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 ARMC12Q5T9G4 340 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TMEM154Q6P9G4 183 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 CHSY3Q70JA7 882 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 DDX53Q86TM3 631 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 FUNDC1Q8IVP5 155 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 PGAM4Q8N0Y7 254 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 PIH1D2Q8WWB5 315 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TOX2Q96NM4 488 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 ECSITQ9BQ95 431 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 C17orf80Q9BSJ5 609 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 SEZ6LQ9BYH1 1024 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 DERL2Q9GZP9 239 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 RC3H2Q9HBD1 1191 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 CACNA2D2Q9NY47 1150 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 EIF2B4Q9UI10 523 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 ZNF225Q9UK10 706 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 INTS6Q9UL03 887 aaKnown RBP10.54□□□□□ -0.72
CUX1-217ENST00000558836 COMMD10Q9Y6G5 202 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 TANC1Q9C0D5 1861 aa10.54□□□□□ -0.72
CUX1-217ENST00000558836 NR5A2O00482 541 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 TRIM16O95361 564 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PRAMEF1O95521 474 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CCR2P41597 374 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 DIO3P55073 304 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 AQP4P55087 323 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PSME3P61289 254 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CREB5Q02930 508 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 BLMHQ13867 455 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 GRAMD1BQ3KR37 738 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 REP15Q6BDI9 236 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CYP2R1Q6VVX0 501 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 Q6ZNB5 142 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 ST13P5Q8NFI4 369 aaPredicted RBP10.53□□□□□ -0.72
CUX1-217ENST00000558836 RHEBL1Q8TAI7 183 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 RIN3Q8TB24 985 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 NUDT8Q8WV74 236 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 MRPS31Q92665 395 aaKnown RBP10.53□□□□□ -0.72
CUX1-217ENST00000558836 MYO19Q96H55 970 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 HERC2P3Q9BVR0 1158 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 SLC46A2Q9BY10 475 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CIPCQ9C0C6 399 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 COPS7BQ9H9Q2 264 aaPredicted RBP10.53□□□□□ -0.72
CUX1-217ENST00000558836 CD274Q9NZQ7 290 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 STOML2Q9UJZ1 356 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PCDHGA7Q9Y5G6 932 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 OAS3Q9Y6K5 1087 aaKnown RBP10.53□□□□□ -0.72
CUX1-217ENST00000558836 PRSS21Q9Y6M0 314 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 SLC30A1Q9Y6M5 507 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 MYO9BQ13459 2157 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 TRIM24O15164 1050 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 FZD6O60353 706 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 RFPL2O75678 378 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PGLSO95336 258 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CXCL14O95715 111 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 LRG1P02750 347 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PYGLP06737 847 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 C8AP07357 584 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 HGFP14210 728 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 CES1P23141 567 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 ME2P23368 584 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 HNF1BP35680 557 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 IL2P60568 153 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 NFKB2Q00653 900 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 KLC1Q07866 573 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 RBBP7Q16576 425 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 PLA2G4EQ3MJ16 856 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 INO80DQ53TQ3 878 aaPredicted RBP10.53□□□□□ -0.72
CUX1-217ENST00000558836 RFLNAQ6ZTI6 216 aa10.53□□□□□ -0.72
CUX1-217ENST00000558836 SPRED2Q7Z698 418 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms