RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 SF3A3Q12874 501 aaKnown RBP eCLIP7.88□□□□□ -1.15
VMA21-203ENST00000477649 TUBB3Q13509 450 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 KCNC3Q14003 757 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ARHGEF7Q14155 803 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 SEMA3AQ14563 771 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ZNF460Q14592 562 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 SPRED3Q2MJR0 410 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ACCSLQ4AC99 568 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 WASHC2DQ5SRD0 308 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ZNF678Q5SXM1 525 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 PTRHD1Q6GMV3 140 aaKnown RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 PAQR3Q6TCH7 311 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 NAPRTQ6XQN6 538 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 FRMD7Q6ZUT3 714 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 LDB1Q86U70 411 aaPredicted RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 CLYBLQ8N0X4 340 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 CPSF7Q8N684 471 aaKnown RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 CCNYL1Q8N7R7 359 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ZNF781Q8N8C0 355 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 TXNDC5Q8NBS9 432 aaKnown RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 TTC16Q8NEE8 873 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 OR2A12Q8NGT7 310 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 CEP70Q8NHQ1 597 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ACTRT2Q8TDY3 377 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 UCMAQ8WVF2 138 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ANKRD49Q8WVL7 239 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 BHMTQ93088 406 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 SLC7A6OSQ96CW6 309 aaPredicted RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 BIRC8Q96P09 236 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ATOH8Q96SQ7 321 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 CCDC106Q9BWC9 280 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 SMG9Q9H0W8 520 aaKnown RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 ALG9Q9H6U8 611 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 ASB8Q9H765 288 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 IL26Q9NPH9 171 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 PNPOQ9NVS9 261 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 KCTD5Q9NXV2 234 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 NUDT4Q9NZJ9 180 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 MARCOQ9UEW3 520 aaPredicted RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 CRLS1Q9UJA2 301 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 CLEC4EQ9ULY5 219 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 PLA2G4CQ9UP65 541 aa7.88□□□□□ -1.15
VMA21-203ENST00000477649 HELZP42694 1942 aaKnown RBP7.88□□□□□ -1.15
VMA21-203ENST00000477649 H0Y858 1186 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 CCL22O00626 93 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 SCAMP3O14828 347 aaKnown RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 NPC1O15118 1278 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 SNX2O60749 519 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 AP2A2O94973 939 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 SLC4A1P02730 911 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 PRNPP04156 253 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 S100BP04271 92 aaPredicted RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 CISD3P0C7P0 127 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 THRAP10827 490 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 GFAPP14136 432 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 BPIP17213 487 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 CTPS1P17812 591 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 CHRM3P20309 590 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 XPAP23025 273 aaPredicted RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 SP100P23497 879 aaPredicted RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 VIPR1P32241 457 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 MAPK9P45984 424 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 COPAP53621 1224 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 ALDH18A1P54886 795 aaKnown RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 TIAL1Q01085 375 aaKnown RBP eCLIP7.87□□□□□ -1.15
VMA21-203ENST00000477649 PTPRCAPQ14761 206 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 HERC3Q15034 1050 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 MAPRE2Q15555 327 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 SNCBQ16143 134 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 EML3Q32P44 896 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 HSF5Q4G112 596 aaPredicted RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 ZNF805Q5CZA5 627 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 C6orf163Q5TEZ5 329 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 ANKS6Q68DC2 871 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 PSAPL1Q6NUJ1 521 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 ERAP2Q6P179 960 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 CRTC1Q6UUV9 634 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 TMEM207Q6UWW9 146 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 DPY19L3Q6ZPD9 716 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 GPR149Q86SP6 731 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 ALYREFQ86V81 257 aaKnown RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 SERPINA9Q86WD7 417 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 NPAS3Q8IXF0 933 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 PARP9Q8IXQ6 854 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 ETFBKMTQ8IXQ9 262 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 PIANPQ8IYJ0 282 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 NRSN1Q8IZ57 195 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 LSMEM2Q8N112 164 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 NXPE1Q8N323 547 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 FBXO39Q8N4B4 442 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 CPA6Q8N4T0 437 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 TEX9Q8N6V9 391 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 FRS2Q8WU20 508 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 PBXIP1Q96AQ6 731 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 MAELQ96JY0 434 aaKnown RBP7.87□□□□□ -1.15
VMA21-203ENST00000477649 ASB16Q96NS5 453 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 COPS8Q99627 209 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 GPR21Q99679 349 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 TBC1D10AQ9BXI6 508 aa7.87□□□□□ -1.15
VMA21-203ENST00000477649 NUSAP1Q9BXS6 441 aaKnown RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms