RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 UGT1A3P35503 534 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UGT1A5P35504 534 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 GPR1P46091 355 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 CRYMQ14894 314 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UNC5AQ6ZN44 842 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UNC5BQ8IZJ1 945 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 TP53I13Q8NBR0 393 aaPredicted RBP17.1■□□□□ 0.33
LIME1-202ENST00000444951 C1orf216Q8TAB5 229 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 SLC6A18Q96N87 628 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 NAT9Q9BTE0 207 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UGT1A7Q9HAW7 530 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UGT1A10Q9HAW8 530 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 UGT1A8Q9HAW9 530 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 TREX1Q9NSU2 369 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 NEUROG3Q9Y4Z2 214 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 SLC30A1Q9Y6M5 507 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 TMEM131Q92545 1883 aa17.1■□□□□ 0.33
LIME1-202ENST00000444951 DOCK9Q9BZ29 2069 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 CABIN1Q9Y6J0 2220 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 A0A1W2PPC4 97 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 H0Y8X5 98 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 FPGTO14772 594 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 INPP4BO15327 924 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 USP1O94782 785 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PRAMEF1O95521 474 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 GOT2P00505 430 aaKnown RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 PRSS56P0CW18 603 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 GNSP15586 552 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PAMP19021 973 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 MCM3P25205 808 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 IGFALSP35858 605 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PEX6Q13608 980 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 INPP5AQ14642 412 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 STAT4Q14765 748 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 SPANXN3Q5MJ09 141 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 ZDHHC20Q5W0Z9 365 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 WDR93Q6P2C0 686 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PNCKQ6P2M8 343 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 CEP128Q6ZU80 1094 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 ZNF765Q7L2R6 523 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 TAS2R42Q7RTR8 314 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PTAR1Q7Z6K3 402 aaPredicted RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 NAXDQ8IW45 347 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.09■□□□□ 0.33
LIME1-202ENST00000444951 ASB12Q8WXK4 309 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 CENPTQ96BT3 561 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 LENG8Q96PV6 779 aaPredicted RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 PLEKHG4BQ96PX9 1271 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 KLF6Q99612 283 aaPredicted RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 TSPYL1Q9H0U9 437 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 ASB8Q9H765 288 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 VPS37BQ9H9H4 285 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 ARFGAP3Q9NP61 516 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PPANQ9NQ55 473 aaKnown RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 C20orf96Q9NUD7 363 aaPredicted RBP17.09■□□□□ 0.33
LIME1-202ENST00000444951 APPL1Q9UKG1 709 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 RIMKLBQ9ULI2 386 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 DMTF1Q9Y222 760 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 MSRB2Q9Y3D2 182 aa17.09■□□□□ 0.33
LIME1-202ENST00000444951 PLXNB3Q9ULL4 1909 aa17.08■□□□□ 0.33
LIME1-202ENST00000444951 PLXNA2O75051 1894 aa17.08■□□□□ 0.33
LIME1-202ENST00000444951 POM121BA6NF01 834 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 FADS2P1A8MWK0 482 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 PRAMEF26H0Y7S4 382 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 GAPDHSO14556 408 aaPredicted RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 SRP72O76094 671 aaKnown RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 TTC4O95801 387 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 SSTR1P30872 391 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 CDKN1CP49918 316 aaPredicted RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 DCDC1P59894 354 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 XIAPP98170 497 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 AGERQ15109 404 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 KYNUQ16719 465 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 LONRF1Q17RB8 773 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 ATP13A5Q4VNC0 1218 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 HENMT1Q5T8I9 393 aaKnown RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 AFTPHQ6ULP2 937 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 RAB44Q7Z6P3 723 aaPredicted RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 TMEM135Q86UB9 458 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 CCNJLQ8IV13 435 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 TRAM1L1Q8N609 369 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 PNPLA1Q8N8W4 532 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 MYRIPQ8NFW9 859 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 OR4L1Q8NH43 312 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 GDAP1Q8TB36 358 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 ZNF398Q8TD17 642 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 ZCCHC14Q8WYQ9 949 aaKnown RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 ORAI3Q9BRQ5 295 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 PHACTR1Q9C0D0 580 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 KCTD5Q9NXV2 234 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 NINJ2Q9NZG7 142 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 CRLS1Q9UJA2 301 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 OR1A2Q9Y585 309 aa17.08■□□□□ 0.32
LIME1-202ENST00000444951 DSPP15924 2871 aaKnown RBP17.08■□□□□ 0.32
LIME1-202ENST00000444951 CELSR3Q9NYQ7 3312 aa17.07■□□□□ 0.32
LIME1-202ENST00000444951 ZCWPW2A0A1B0GU75 182 aa17.07■□□□□ 0.32
LIME1-202ENST00000444951 SRRM3A6NNA2 597 aaPredicted RBP17.07■□□□□ 0.32
LIME1-202ENST00000444951 C10orf142B7Z368 130 aa17.07■□□□□ 0.32
LIME1-202ENST00000444951 BCAT2O15382 392 aaPredicted RBP17.07■□□□□ 0.32
LIME1-202ENST00000444951 CBFA2T3O75081 653 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms