RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ENPP6Q6UWR7 440 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 ALKAL1Q6UXT8 129 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 CILP2Q8IUL8 1156 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 DHRSXQ8N5I4 330 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 PCYOX1LQ8NBM8 494 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 EEF1AKMT1Q8WVE0 214 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 MYLIPQ8WY64 445 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 LRRC58Q96CX6 371 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 CHID1Q9BWS9 393 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 RBM38Q9H0Z9 239 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 TRMT13Q9NUP7 481 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 SPO11Q9Y5K1 396 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 CCDC154A6NI56 674 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MATN3O15232 486 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 HS6ST1O60243 411 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SNX2O60749 519 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MITFO75030 526 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 COL6A2P12110 1019 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SLC2A4P14672 509 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SLC6A2P23975 617 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 VARSP26640 1264 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 SHMT2P34897 504 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 TNK2Q07912 1038 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SPIDRQ14159 915 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 CYP2A13Q16696 494 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PGS1Q32NB8 556 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 POM121L1PQ3SYA9 428 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 GDF6Q6KF10 455 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 FBXL22Q6P050 247 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 CCDC80Q76M96 950 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 RAB44Q7Z6P3 723 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 PIANPQ8IYJ0 282 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 LGI2Q8N0V4 545 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 TTC39CQ8N584 583 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 KRTCAP2Q8N6L1 136 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 C2CD4AQ8NCU7 369 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 OR10A6Q8NH74 314 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 APBB2Q92870 758 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 UBE2FQ969M7 185 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ZFRQ96KR1 1074 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 PTPN18Q99952 460 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 YIPF2Q9BWQ6 316 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ABHD16BQ9H3Z7 469 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 RPF2Q9H7B2 306 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 PNPLA3Q9NST1 481 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FKBPLQ9UIM3 349 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MAGEB16A2A368 324 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 IRAK2O43187 625 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 GMNNO75496 209 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ECI2O75521 394 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 S1PR4O95977 384 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 C1RP00736 705 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ALBP02768 609 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 APOA4P06727 396 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ALPIP09923 528 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PNPLA4P41247 253 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 NEK2P51955 445 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 NKX2-5P52952 324 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 TBX4P57082 545 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 CLCQ05315 142 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SEMA3BQ13214 749 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FAM180BQ6P0A1 224 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PLEKHH3Q7Z736 793 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 OR2T11Q8NH01 316 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 METTL6Q8TCB7 284 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FRS2Q8WU20 508 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PYCR2Q96C36 320 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 NOL6Q9H6R4 1146 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 TBC1D13Q9NVG8 400 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SUN2Q9UH99 717 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PADI3Q9ULW8 664 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ZNF451Q9Y4E5 1061 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ANKRD33BA6NCL7 494 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 K7EPI3 171 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ZNF682O95780 498 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MLYCDO95822 493 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MYCLP1P12525 358 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 WARSP23381 471 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 SLC7A1P30825 629 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FMO3P31513 532 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 MAGEA12P43365 314 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 HSPA7P48741 367 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 RAD23AP54725 363 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 CCL23P55773 120 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 RPL38P63173 70 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 POU4F1Q01851 419 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 CBX3Q13185 183 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 NOL9Q5SY16 702 aaKnown RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 ATXN7L2Q5T6C5 722 aaPredicted RBP8.59□□□□□ -1.03
USP40-203ENST00000427112 TMEM236Q5W0B7 351 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PSAPL1Q6NUJ1 521 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 DCLRE1AQ6PJP8 1040 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ANGPTL8Q6UXH0 198 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 DET1Q7L5Y6 550 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 SYVN1Q86TM6 617 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FAM126BQ8IXS8 530 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 DTNBP1Q96EV8 351 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 FEM1CQ96JP0 617 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 RANBP9Q96S59 729 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 ROGDIQ9GZN7 287 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms