RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 CTTNQ14247 550 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 TSTQ16762 297 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 GSTA3Q16772 222 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 SOWAHAQ2M3V2 549 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TCTN1Q2MV58 587 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TTC31Q49AM3 519 aaPredicted RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 HSP90B2PQ58FF3 399 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TXNDC8Q6A555 127 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 FAAH2Q6GMR7 532 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 FAM173BQ6P4H8 233 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TRIM65Q6PJ69 517 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TMED8Q6PL24 325 aaPredicted RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 DSTYKQ6XUX3 929 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 ADAMTS13Q76LX8 1427 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 RSRC2Q7L4I2 434 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 MAATS1Q7Z4T9 603 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 TDRPQ86YL5 185 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 EFCAB13Q8IY85 973 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 DIS3L2Q8IYB7 885 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 CCDC105Q8IYK2 499 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 ZCCHC9Q8N567 271 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 PARP16Q8N5Y8 322 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PI4KAP1Q8N8J0 262 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PRR26Q8N8Z3 221 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 Q8N9P0 234 aaPredicted RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 TRIML1Q8N9V2 468 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 LINC00301Q8NCQ3 95 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CCDC191Q8NCU4 936 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 MSANTD4Q8NCY6 345 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CADM4Q8NFZ8 388 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 METTL6Q8TCB7 284 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 SNAPC3Q92966 411 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CCDC51Q96ER9 411 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 RPGRIP1Q96KN7 1286 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 C7orf26Q96N11 449 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PANX2Q96RD6 677 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CTAGE1Q96RT6 745 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 USP28Q96RU2 1077 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 BAG1Q99933 345 aaPredicted RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 CARD6Q9BX69 1037 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 XPO4Q9C0E2 1151 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 GOLPH3LQ9H4A5 285 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 ZHX3Q9H4I2 956 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 EBF3Q9H4W6 596 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 VIPAS39Q9H9C1 493 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 BRF2Q9HAW0 419 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CLK4Q9HAZ1 481 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 BPIFA1Q9NP55 256 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 GPR108Q9NPR9 543 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PCDHB16Q9NRJ7 776 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 MIS18AQ9NYP9 233 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 IFNKQ9P0W0 207 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 MYO6Q9UM54 1294 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PCDHA7Q9UN72 937 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 PPP2R2CQ9Y2T4 447 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 RRP15Q9Y3B9 282 aaKnown RBP2.72□□□□□ -1.97
VPS41-206ENST00000418457 PAM16Q9Y3D7 125 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 SCINQ9Y6U3 715 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 A3GALT2U3KPV4 340 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 CARMIL3Q8ND23 1372 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 HEG1Q9ULI3 1381 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 MYH7P12883 1935 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 LAMB4A4D0S4 1761 aa2.72□□□□□ -1.97
VPS41-206ENST00000418457 COL22A1Q8NFW1 1626 aaPredicted RBP2.71□□□□□ -1.97
VPS41-206ENST00000418457 ATXN2Q99700 1313 aaKnown RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 ZNF609O15014 1411 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 KDM6AO15550 1401 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 IGHV4-28A0A0C4DH34 117 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 A0A1B0GVM2 712 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 NPIPB15A6NHN6 443 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 USP17L23D6RBM5 183 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 NPIPB11E5RHQ5 1161 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 TAF4O00268 1085 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 POLR3GO15318 223 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 INSIG1O15503 277 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 KLK8O60259 260 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 KIF5CO60282 957 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 JAK2O60674 1132 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 SEC14L2O76054 403 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 TMEM63AO94886 807 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 NDUFB4O95168 129 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 NTN1O95631 604 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 ZFYP08048 801 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 HOXC6P09630 235 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 HSPA1AP0DMV8 641 aaKnown RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 HSPA1BP0DMV9 641 aaKnown RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 SNHG28P0DPA3 235 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 ETFAP13804 333 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 PFKFB1P16118 471 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 CHATP28329 748 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 RPL3P39023 403 aaKnown RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 SYKP43405 635 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 PIP4K2AP48426 406 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 AMTP48728 403 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 LMAN1P49257 510 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 NDUFA8P51970 172 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 GTF2A1P52655 376 aaPredicted RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 EIF5P55010 431 aaKnown RBP2.71□□□□□ -1.98
VPS41-206ENST00000418457 GNG11P61952 73 aa2.71□□□□□ -1.98
VPS41-206ENST00000418457 RPL7AP62424 266 aaKnown RBP2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms