RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ZNF510Q9Y2H8 683 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 H0Y858 1186 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 CDC7O00311 574 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ENPP3O14638 875 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 MGEA5O60502 916 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SNAP91O60641 907 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ECI2O75521 394 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 RPP40O75818 363 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TBX18O95935 607 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 HNRNPCP07910 306 aaKnown RBP eCLIP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TFPTP0C1Z6 253 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 HRH2P25021 359 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 IL12AP29459 219 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 POLR2IP36954 125 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 AGTR2P50052 363 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 STC1P52823 247 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TBX4P57082 545 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ADARB1P78563 741 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TSPY1Q01534 308 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TSNQ15631 228 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SPATS1Q496A3 300 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 AARS2Q5JTZ9 985 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NANOGP8Q6NSW7 305 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 UGT3A1Q6NUS8 523 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 FBXL22Q6P050 247 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 MRPL10Q7Z7H8 261 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SYVN1Q86TM6 617 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 THEM5Q8N1Q8 247 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 LRRC43Q8N309 656 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SMYD1Q8NB12 490 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 OR2T11Q8NH01 316 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF420Q8TAQ5 688 aaPredicted RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TSPEARQ8WU66 669 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 BIRC7Q96CA5 298 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 THAP11Q96EK4 314 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ACOX2Q99424 681 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 C1orf50Q9BV19 199 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 AP5M1Q9H0R1 490 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NANOGQ9H9S0 305 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TLR9Q9NR96 1032 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 CATSPERZQ9NTU4 200 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 FAIMQ9NVQ4 179 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 INTS10Q9NVR2 710 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF639Q9UID6 485 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 RNF112Q9ULX5 631 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 CCDC154A6NI56 674 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NCF1BA6NI72 391 aaPredicted RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NCF1CA8MVU1 366 aaPredicted RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 B4GAT1O43505 415 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 EEDO75530 441 aaKnown RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 CRCPO75575 148 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SLC22A3O75751 556 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 C1RP00736 705 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NCF1P14598 390 aaPredicted RBP12.62□□□□□ -0.39
SHMT1-205ENST00000395684 FMO4P31512 558 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ACVRL1P37023 503 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 GPR15P49685 360 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 NEDD8Q15843 81 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ANKS6Q68DC2 871 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 SPATA19Q7Z5L4 167 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF554Q86TJ5 538 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 COLGALT2Q8IYK4 626 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TBC1D21Q8IYX1 336 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TMEM199Q8N511 208 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 TBC1D15Q8TC07 691 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 BRSK1Q8TDC3 778 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 CHID1Q9BWS9 393 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 C8orf4Q9NR00 106 aa12.62□□□□□ -0.39
SHMT1-205ENST00000395684 PTPRDP23468 1912 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 UBA6A0AVT1 1052 aaPredicted RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 MYADML2A6NDP7 307 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 VPS4BO75351 444 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 LDLRP01130 860 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 RPS17P08708 135 aaKnown RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 HOXB8P17481 243 aaPredicted RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 DDR2Q16832 855 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 TIGD2Q4W5G0 525 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 SLC39A12Q504Y0 691 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 MORN1Q5T089 497 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 XKR5Q6UX68 686 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 TANKQ92844 425 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 FUBP1Q96AE4 644 aaKnown RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 ESAMQ96AP7 390 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 CDKN2AIPNLQ96HQ2 116 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 VPS50Q96JG6 964 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 DERL2Q9GZP9 239 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 PAIP1Q9H074 479 aaKnown RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 MUC13Q9H3R2 512 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 GALPQ9UBC7 116 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 NLRC5Q86WI3 1866 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 DOCK3Q8IZD9 2030 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 IGLV3-10A0A075B6K4 115 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 TRIM64BA6NI03 449 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 ZSCAN9O15535 394 aaPredicted RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 RHOBTB1O94844 696 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 UMPSP11172 480 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 HMOX2P30519 316 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 PBX3P40426 434 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 POLR2JP52435 117 aaKnown RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 OR4D2P58180 307 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms