RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF649Q9BS31 505 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF341Q9BYN7 854 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF408Q9H9D4 720 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CCM2LQ9NUG4 571 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 RIMS3Q9UJD0 308 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 MAFBQ9Y5Q3 323 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 NAV1Q8NEY1 1877 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PAPSS2O95340 614 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 METTL18O95568 372 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 AP2A1O95782 977 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PIK3CBP42338 1070 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PRKCQQ04759 706 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 IRF5Q13568 498 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TWF2Q6IBS0 349 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 SWSAP1Q6NVH7 229 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SYCE2Q6PIF2 218 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 METTL7BQ6UX53 244 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ABHD15Q6UXT9 468 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CYP4V2Q6ZWL3 525 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 PAGE2Q7Z2X7 111 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CLYBLQ8N0X4 340 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SPPL2AQ8TCT8 520 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SNX15Q9NRS6 342 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PTGFRNQ9P2B2 879 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 FARSAQ9Y285 508 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 KCNIP3Q9Y2W7 256 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 LYVE1Q9Y5Y7 322 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 COL16A1Q07092 1604 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 FAM240BA0A1B0GVZ2 78 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SMIM22K7EJ46 135 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SSX5O60225 188 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 NRP2O60462 931 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CPNE3O75131 537 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 MATN4O95460 622 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 HLA-DQA2P01906 255 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SLC2A3P11169 496 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PTPN2P17706 415 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 DCKP27707 260 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CBX5P45973 191 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PIK3CGP48736 1102 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 MAPK12P53778 367 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 RHEBQ15382 184 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZIK1Q3SY52 487 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 FAM98BQ52LJ0 330 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 FGD3Q5JSP0 725 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 BICRALQ6AI39 1079 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TIGD3Q6B0B8 471 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 METTL2BQ6P1Q9 378 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF773Q6PK81 442 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SSX6Q7RTT6 188 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 OR5J2Q8NH18 312 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 OR4C6Q8NH72 309 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 URGCPQ8TCY9 931 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 MYLPFQ96A32 169 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CLPTM1LQ96KA5 538 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PHF12Q96QT6 1004 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CLCC1Q96S66 551 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 GPR22Q99680 433 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SLC2A11Q9BYW1 496 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PTPRJQ12913 1337 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PRAMEF33A0A0G2JMD5 474 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 DHRS12A0PJE2 317 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TVP23AA6NH52 213 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 NCF1BA6NI72 391 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 NCF1CA8MVU1 366 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 PRAMEF10O60809 474 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 RECQL5O94762 991 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZBTB7AO95365 584 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 C9P02748 559 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 NCF1P14598 390 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 GPC1P35052 558 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ETFBP38117 255 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TPTEP56180 551 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF234Q14588 700 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TAF13Q15543 124 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PIGGQ5H8A4 983 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 BRMS1LQ5PSV4 323 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 LCN8Q6JVE9 175 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 SLCO6A1Q86UG4 719 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZZZ3Q8IYH5 903 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ABI1Q8IZP0 508 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 BHLHE22Q8NFJ8 381 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 AUTS2Q8WXX7 1259 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 STARD8Q92502 1023 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 RNF145Q96MT1 663 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 GPATCH1Q9BRR8 931 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 GATA5Q9BWX5 397 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 MROH8Q9H579 483 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 DHX35Q9H5Z1 703 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZBTB26Q9HCK0 441 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CHRAC1Q9NRG0 131 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 IFT80Q9P2H3 777 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 FAM198AQ9UFP1 575 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 EIF3LQ9Y262 564 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 A0A1B0GUL6 1792 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 VILLO15195 856 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 LCP1P13796 627 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TFEBP19484 476 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ASMTP46597 345 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 MYBPC1Q00872 1141 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms