RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC18A3Q16572 532 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PGS1Q32NB8 556 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CCDC81Q6ZN84 652 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ERN2Q76MJ5 926 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 VN1R5Q7Z5H4 357 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SLC22A9Q8IVM8 553 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 C12orf29Q8N999 325 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PTPN18Q99952 460 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ZCWPW1Q9H0M4 648 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KCNH6Q9H252 994 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PGAP2Q9UHJ9 254 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GLS2Q9UI32 602 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 A0A1W2PQU0 124 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FAM187AA6NFU0 413 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TM9SF1O15321 606 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CYB5AP00167 134 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 HAPLN1P10915 354 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 HLA-EP13747 358 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SERPINB1P30740 379 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KCNK10P57789 538 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SLC25A52Q3SY17 297 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GTF2IRD2BQ6EKJ0 949 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TMPPEQ6ZT21 453 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 C14orf80Q86SX3 495 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GTF2IRD2Q86UP8 949 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SLC39A11Q8N1S5 342 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MRPS30Q9NP92 439 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 DUSP12Q9UNI6 340 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PPP2R2CQ9Y2T4 447 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MYH15Q9Y2K3 1946 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MATN2O00339 956 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PI15O43692 258 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CPSF4O95639 269 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 LAMP2P13473 410 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF8P17098 575 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NFKB1P19838 968 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CHRNB4P30926 498 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FMO4P31512 558 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NCF4Q15080 339 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MILR1Q7Z6M3 343 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TMC8Q8IU68 726 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C1orf210Q8IVY1 113 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DPP10Q8N608 796 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF366Q8N895 744 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DTWD2Q8NBA8 298 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TTLQ8NG68 377 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KCNE4Q8WWG9 221 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KAZALD1Q96I82 304 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MRPL45Q9BRJ2 306 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 METTL7AQ9H8H3 244 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 BPIFA1Q9NP55 256 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 HMG20AQ9NP66 347 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KLC4Q9NSK0 619 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PIK3C2AO00443 1686 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PLCH1Q4KWH8 1693 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SMIM31A0A1B0GVY4 71 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FAM86C2PA6NEL3 165 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MSI1O43347 362 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GLULP15104 373 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CD46P15529 392 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CDK18Q07002 472 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 VPS26BQ4G0F5 336 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C3orf38Q5JPI3 329 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KIAA0895LQ68EN5 471 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RBMS3Q6XE24 437 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TMCO2Q7Z6W1 182 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 LONP2Q86WA8 852 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SYT12Q8IV01 421 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FAM13CQ8NE31 585 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 HTR3CQ8WXA8 447 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 UCN3Q969E3 161 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 THOC1Q96FV9 657 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ARL5BQ96KC2 179 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DGAT2Q96PD7 388 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NEDD4LQ96PU5 975 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 OR2M4Q96R27 311 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KCNK13Q9HB14 408 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NMRAL1Q9HBL8 299 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 B3GAT2Q9NPZ5 323 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ADA2Q9NZK5 511 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 POLG2Q9UHN1 485 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 BAIAP2L1Q9UHR4 511 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PSMD13Q9UNM6 376 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CHKBQ9Y259 395 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ADGRB1O14514 1584 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SPTBP11277 2137 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 UPK3BL1B0FP48 263 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 UPK3BL2E5RIL1 263 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PSMD11O00231 422 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PHF2O75151 1096 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 P04436 131 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ARL2P36404 184 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SMSP52788 366 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ANTXR2P58335 489 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CYP51A1Q16850 503 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PPP1R26Q5T8A7 1209 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RSPO2Q6UXX9 243 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C1orf186Q6ZWK4 172 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RNF44Q7L0R7 432 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GPR149Q86SP6 731 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms