RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 FAM98BQ52LJ0 330 aaKnown RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 IRGCQ6NXR0 463 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 GCNT7Q6ZNI0 430 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 CHSY3Q70JA7 882 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 TMPRSS6Q8IU80 811 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 CKAP2Q8WWK9 683 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 DNAJC9Q8WXX5 260 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 STARD8Q92502 1023 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 SHDQ96IW2 340 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 NPY6RQ99463 290 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 SGIP1Q9BQI5 828 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 PHACTR1Q9C0D0 580 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 NKX2-4Q9H2Z4 354 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 SLC40A1Q9NP59 571 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 ELOVL2Q9NXB9 296 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 IGKV6D-21A0A0A0MT36 114 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 CNPP09543 421 aaKnown RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 NUDT17P0C025 328 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 NQO1P15559 274 aaKnown RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 GNSP15586 552 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 ME2P23368 584 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 GRIA1P42261 906 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 MAGEA11P43364 429 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 COPZ1P61923 177 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 UBE3AQ05086 875 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 ITPRIPL2Q3MIP1 535 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 TTC33Q6PID6 262 aaPredicted RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 STK32CQ86UX6 486 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 ZNF786Q8N393 782 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 ZBTB2Q8N680 514 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 SLC44A1Q8WWI5 657 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 PROX1Q92786 737 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 RAD51AP1Q96B01 352 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 PIWIL1Q96J94 861 aaKnown RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 AIF1LQ9BQI0 150 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 GTPBP2Q9BX10 602 aaKnown RBP9.2□□□□□ -0.94
GGA3-223ENST00000621870 BTBD1Q9H0C5 482 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 DNAJC28Q9NX36 388 aa9.2□□□□□ -0.94
GGA3-223ENST00000621870 FAM220BPB1ANY3 271 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 COCHO43405 550 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ITGBL1O95965 494 aaPredicted RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 TIMP1P01033 207 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ALDH4A1P30038 563 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 SCTRP47872 440 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 GNA13Q14344 377 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 UAP1L1Q3KQV9 507 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TTMPQ5BVD1 217 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 KIAA0408Q6ZU52 694 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ZFP28Q8NHY6 868 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 GLMNQ92990 594 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 C12orf66Q96MD2 445 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 PANX1Q96RD7 426 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 EXO5Q9H790 373 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 NOD2Q9HC29 1040 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 DNAJC11Q9NVH1 559 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 RAP2CQ9Y3L5 183 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 N6AMT1Q9Y5N5 214 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ARL5AQ9Y689 179 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 SCN11AQ9UI33 1791 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 DEAF1O75398 565 aaPredicted RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 BEST1O76090 585 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 CCND1P24385 295 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 NSG1P42857 185 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 BLKP51451 505 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 DEFB103AP81534 67 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 FOXM1Q08050 763 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TIGD2Q4W5G0 525 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 MS4A13Q5J8X5 152 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 FAAH2Q6GMR7 532 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TXNDC11Q6PKC3 985 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 AMZ2Q86W34 360 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 DHFR2Q86XF0 187 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 GATAD2AQ86YP4 633 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ZC3H7AQ8IWR0 971 aaKnown RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 CMTR2Q8IYT2 770 aaKnown RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 FBXO30Q8TB52 745 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 PTCD2Q8WV60 388 aaKnown RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 AGAP2Q99490 1192 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ELAC1Q9H777 363 aaKnown RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 WDR26Q9H7D7 661 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 SGK2Q9HBY8 427 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 SPATS2LQ9NUQ6 558 aaKnown RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 USE1Q9NZ43 259 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ZNF232Q9UNY5 417 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 POLR1DQ9Y2S0 133 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TRAF6Q9Y4K3 522 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 COLEC10Q9Y6Z7 277 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TOPAZ1Q8N9V7 1692 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 C15orf38-AP3S2A0A0A6YYH1 394 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 CCDC162PA2VCL2 907 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 CPED1A4D0V7 1026 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 FOXO6A8MYZ6 492 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 TMEM63AO94886 807 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ITGB1P05556 798 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ANXA6P08133 673 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 NR2F1P10589 423 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 EN2P19622 333 aaPredicted RBP9.19□□□□□ -0.94
GGA3-223ENST00000621870 DDX6P26196 483 aaKnown RBP eCLIP9.19□□□□□ -0.94
GGA3-223ENST00000621870 VIPR2P41587 438 aa9.19□□□□□ -0.94
GGA3-223ENST00000621870 ZBTB17Q13105 803 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms