RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GPR21Q99679 349 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ERVK-6Q9BXR3 956 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 UGT2B28Q9BY64 529 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 C6orf62Q9GZU0 229 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 FAM124BQ9H5Z6 455 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 CCM2LQ9NUG4 571 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 PADI4Q9UM07 663 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 GMEB1Q9Y692 573 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 K7EPI3 171 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PIRO00625 290 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 SEC22BO75396 215 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ATE1O95260 518 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ANXA6P08133 673 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 WARSP23381 471 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 AXLP30530 894 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 DGKQP52824 942 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 TXNL4AP83876 142 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 PAQR3Q6TCH7 311 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 HORMAD1Q86X24 394 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 CFAP52Q8N1V2 620 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 TMEM86AQ8N2M4 240 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 C2CD4AQ8NCU7 369 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 FAM110BQ8TC76 370 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ACTR3BQ9P1U1 418 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ZNHIT2Q9UHR6 403 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 POLR3HQ9Y535 204 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 AP1G1O43747 822 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 FTH1P02794 183 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 CAPN3P20807 821 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 LCP2Q13094 533 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 DDX39BQ13838 428 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 ZNF829Q3KNS6 432 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 SLC2A7Q6PXP3 512 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 CCDC103Q8IW40 242 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 CCDC117Q8IWD4 279 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 SERPINB11Q96P15 392 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 POLR1EQ9GZS1 481 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 OSBPL2Q9H1P3 480 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 SLC25A51Q9H1U9 297 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 MARCH4Q9P2E8 410 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 GALPQ9UBC7 116 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 KLQ9UEF7 1012 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ADGRE2Q9UHX3 823 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PPP2R3BQ9Y5P8 575 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ST14Q9Y5Y6 855 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PRRC2BQ5JSZ5 2229 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 MEIS3P2A8K0S8 358 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 CDK14O94921 469 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 GSNP06396 782 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 IRF1P10914 325 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 PSEN2P49810 448 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 MAPKAPK3Q16644 382 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 ZNF678Q5SXM1 525 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 GPR180Q86V85 440 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 ZBTB8BQ8NAP8 495 aaPredicted RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 OR2T12Q8NG77 320 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 ANKRD60Q9BZ19 345 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 EIF2B4Q9UI10 523 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 VPS28Q9UK41 221 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 DNAJC15Q9Y5T4 150 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 PTCH2Q9Y6C5 1203 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 A0A1W2PQH9 124 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 CCDC162PA2VCL2 907 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 CYP2C18P33260 490 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 POLD2P49005 469 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 ARSDP51689 593 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 IL2P60568 153 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 SH3BP2P78314 561 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 OR4K2Q8NGD2 314 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 TAMM41Q96BW9 452 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 TINF2Q9BSI4 451 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 MUC3BQ9H195 1237 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 SMURF2Q9HAU4 748 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 USP3Q9Y6I4 520 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 A8MX80 341 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 TMX2-CTNND1H3BSU7 103 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 GPR182O15218 404 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 VPS4BO75351 444 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 CNPP09543 421 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 HSMCR30P0CW71 290 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 PRKACGP22612 351 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 THPOP40225 353 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 CDKN2DP55273 166 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 FOXA1P55317 472 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 MCCD1P59942 119 aaPredicted RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 DMC1Q14565 340 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 MAPRE1Q15691 268 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 RETREG3Q86VR2 466 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 OR10A6Q8NH74 314 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 PTCD2Q8WV60 388 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 ELMO1Q92556 727 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 TFAP2CQ92754 450 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 BIRC7Q96CA5 298 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 LINGO1Q96FE5 620 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 WDR6Q9NNW5 1121 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 EXOSC4Q9NPD3 245 aaKnown RBP12.53□□□□□ -0.4
LIG1-221ENST00000613670 ST3GAL5Q9UNP4 418 aa12.53□□□□□ -0.4
LIG1-221ENST00000613670 FAM20BO75063 409 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 SH3BGRLO75368 114 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 BMP10O95393 424 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms