RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF398Q8TD17 642 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 CKAP2Q8WWK9 683 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 MSANTD3Q96H12 275 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 MKRN2Q9H000 416 aaKnown RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 P2RY12Q9H244 342 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 PKD2L2Q9NZM6 624 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 DCDC2Q9UHG0 476 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 TMPRSS11EQ9UL52 423 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 PSMD11O00231 422 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 MID1O15344 667 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 GLRA3O75311 464 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 KLF8O95600 359 aaPredicted RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 C7P10643 843 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ITGALP20701 1170 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ACRV1P26436 265 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 CRABP2P29373 138 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ETV3P41162 512 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 MRPS21P82921 87 aaKnown RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 GABPB1Q06547 395 aaPredicted RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 GPR33Q49SQ1 333 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ATP13A5Q4VNC0 1218 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 CTSL3PQ5NE16 218 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FAM46CQ5VWP2 391 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FAM45BPQ6NSW5 357 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 TMEM207Q6UWW9 146 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 TAS2R42Q7RTR8 314 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 OR2T3Q8NH03 318 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FAM45AQ8TCE6 357 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 DTX3LQ8TDB6 740 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 COQ10AQ96MF6 247 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 TMEM216Q9P0N5 145 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 CD84Q9UIB8 345 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 DUSP12Q9UNI6 340 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 VPS9D1Q9Y2B5 631 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 RGSL1A5PLK6 1076 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 SYNCRIPO60506 623 aaKnown RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 GSTA1P08263 222 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ELFN1P0C7U0 828 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 CD72P21854 359 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FMO4P31512 558 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 PTGER3P43115 390 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 LIG3P49916 1009 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 TAS2R38P59533 333 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 RPS14P62263 151 aaKnown RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 CREB5Q02930 508 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ELP6Q0PNE2 266 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 DLG1Q12959 904 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 TMEM52BQ4KMG9 183 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 HENMT1Q5T8I9 393 aaKnown RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 N4BP2L1Q5TBK1 243 aaPredicted RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 AGBL4Q5VU57 503 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 C16orf46Q6P387 395 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 RAPH1Q70E73 1250 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 PIM3Q86V86 326 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 NXPE1Q8N323 547 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FAM3CQ92520 227 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 SCAMP4Q969E2 229 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 GPR78Q96P69 363 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ZNF317Q96PQ6 595 aaPredicted RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 WRAP53Q9BUR4 548 aaKnown RBP14.17□□□□□ -0.14
USP39-220ENST00000613444 BOCQ9BWV1 1114 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FAM50BQ9Y247 325 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 ANKRD6Q9Y2G4 727 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 FADS3Q9Y5Q0 445 aa14.17□□□□□ -0.14
USP39-220ENST00000613444 UBA6A0AVT1 1052 aaPredicted RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 PLIN3O60664 434 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 DNAJC6O75061 913 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 ADH1BP00325 375 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 KYAT3Q6YP21 454 aaKnown RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 RAVER1Q8IY67 606 aaKnown RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 ZNF687Q8N1G0 1237 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 TMEM151AQ8N4L1 468 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 RAB7BQ96AH8 199 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 FAM131CQ96AQ9 280 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 UBXN10Q96LJ8 280 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 FAM83DQ9H4H8 585 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 DYRK4Q9NR20 520 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 SERGEFQ9UGK8 458 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 ACOT9Q9Y305 439 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 SRRM3A6NNA2 597 aaPredicted RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 PROCP04070 461 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 COL6A2P12110 1019 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 HOXB2P14652 356 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 C5AR1P21730 350 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 SEC24CP53992 1094 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 IL9RQ01113 521 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 TAF1BQ53T94 588 aaPredicted RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 HHATQ5VTY9 493 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 TRMT11Q7Z4G4 463 aaKnown RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 CACUL1Q86Y37 369 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 ARMC2Q8NEN0 867 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 KCTD4Q8WVF5 259 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 ANKRD49Q8WVL7 239 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP39-220ENST00000613444 PAIP2Q9BPZ3 127 aaKnown RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 IQCGQ9H095 443 aaKnown RBP14.16□□□□□ -0.14
USP39-220ENST00000613444 CDH19Q9H159 772 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 SMOXQ9NWM0 555 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 TLK1Q9UKI8 766 aa14.16□□□□□ -0.14
USP39-220ENST00000613444 IGLV3-16A0A075B6K0 115 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms