RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ATXN7L3BQ96GX2 97 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 RIOK2Q9BVS4 552 aaKnown RBP15.36■□□□□ 0.05
UPF1-206ENST00000598471 C1QTNF7Q9BXJ2 289 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 BTBD1Q9H0C5 482 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 ABCG8Q9H221 673 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 FAM96AQ9H5X1 160 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 SGK2Q9HBY8 427 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 CD84Q9UIB8 345 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 ACTL7BQ9Y614 415 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 SCN8AQ9UQD0 1980 aa15.36■□□□□ 0.05
UPF1-206ENST00000598471 ZNF106Q9H2Y7 1883 aaKnown RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 NCOR1O75376 2440 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TRBV5-4A0A0C4DH59 114 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 UBA6A0AVT1 1052 aaPredicted RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 GOLGA8CPA6NN73 597 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 RNGTTO60942 597 aaKnown RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 HAUS5O94927 633 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 ZNF7P17097 686 aaPredicted RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 OXTRP30559 389 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 PTGER3P43115 390 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TPMTP51580 245 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SLC12A2P55011 1212 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 MAGOHP61326 146 aaKnown RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 SGCGQ13326 291 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 GAS6Q14393 721 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SEMA3AQ14563 771 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 ITIH4Q14624 930 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 MAP7D1Q3KQU3 841 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TNFAIP8L3Q5GJ75 292 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TIFABQ6ZNK6 161 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 RFLNAQ6ZTI6 216 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TRABD2AQ86V40 505 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 FAM124AQ86V42 546 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 NLRP8Q86W28 1048 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SERPINA9Q86WD7 417 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 HORMAD1Q86X24 394 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SRRM1Q8IYB3 904 aaKnown RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 PIANPQ8IYJ0 282 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 RBFAQ8N0V3 343 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 CYP4X1Q8N118 509 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 NXPE1Q8N323 547 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 DCLK2Q8N568 766 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 HEXDCQ8WVB3 486 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SCAMP4Q969E2 229 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TSPAN17Q96FV3 270 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 HHIPQ96QV1 700 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SMC6Q96SB8 1091 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 GPR22Q99680 433 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 MCMBPQ9BTE3 642 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 ITM2CQ9NQX7 267 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 SMOXQ9NWM0 555 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 USP36Q9P275 1121 aaKnown RBP15.35■□□□□ 0.05
UPF1-206ENST00000598471 COQ6Q9Y2Z9 468 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 COMMD10Q9Y6G5 202 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 ATG2BQ96BY7 2078 aa15.35■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3DA0A087WVF3 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3IA0A087WXS9 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3EA0A087X179 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3KA0A087X1G2 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 FAM95CA0A1B0GW59 222 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3FA6NER0 549 aaPredicted RBP15.34■□□□□ 0.05
UPF1-206ENST00000598471 IGLON5A6NGN9 336 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 AGAP14A8MT82 685 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3LB9A6J9 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 CFAP99D6REC4 459 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 F8W8V4 182 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 H3BQF6 201 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ZNF217O75362 1048 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3HP0C7X1 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 PRSS56P0CW18 603 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 RALBP11234 206 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 UGT1A6P19224 532 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 UGT1A1P22309 533 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 UGT1A4P22310 534 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ACRV1P26436 265 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 GABRB3P28472 473 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 UGT1A3P35503 534 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 UGT1A5P35504 534 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 POU4F1Q01851 419 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 DPTQ07507 201 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 AGERQ15109 404 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 DBN1Q16643 649 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ATP13A5Q4VNC0 1218 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3GQ6DHY5 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3CQ6IPX1 549 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 FAM45BPQ6NSW5 357 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 CNSTQ6PJW8 725 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 TBC1D3Q8IZP1 549 aaPredicted RBP15.34■□□□□ 0.05
UPF1-206ENST00000598471 CAMKK1Q8N5S9 505 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 GPATCH11Q8N954 259 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 OR2T34Q8NGX1 318 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 FAM45AQ8TCE6 357 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ACMSDQ8TDX5 336 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 MZB1Q8WU39 189 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 LPGAT1Q92604 370 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ALKBH8Q96BT7 664 aaKnown RBP15.34■□□□□ 0.05
UPF1-206ENST00000598471 ELMO2Q96JJ3 720 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 CABS1Q96KC9 395 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 VPS35Q96QK1 796 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 COPS8Q99627 209 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms