RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 KRT4P19013 534 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 CA5AP35218 305 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 POLD2P49005 469 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ITGA9Q13797 1035 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ATP13A5Q4VNC0 1218 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 LYPLAL1Q5VWZ2 237 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ZNF765Q7L2R6 523 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 SERPINA9Q86WD7 417 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ACVR1CQ8NER5 493 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 FLCNQ8NFG4 579 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 CLDN23Q96B33 292 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 CRYL1Q9Y2S2 319 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 COQ6Q9Y2Z9 468 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 FAM95CA0A1B0GW59 222 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 LZTS3O60299 673 aaPredicted RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 RECQL5O94762 991 aaPredicted RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 ACADMP11310 421 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 NR1D1P20393 614 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ACRV1P26436 265 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 HPDP32754 393 aaPredicted RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 PPARGP37231 505 aaPredicted RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 MAGEA12P43365 314 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 DBN1Q16643 649 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 KIAA1324Q6UXG2 1013 aaKnown RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 NXPE1Q8N323 547 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 TRAM1L1Q8N609 369 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 PJA1Q8NG27 643 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ACMSDQ8TDX5 336 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 AP2M1Q96CW1 435 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 SMC6Q96SB8 1091 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 TTC1Q99614 292 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 ZSCAN5AQ9BUG6 496 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 RIOK2Q9BVS4 552 aaKnown RBP12.11□□□□□ -0.47
HERC1-205ENST00000559886 SPATA16Q9BXB7 569 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 SMOXQ9NWM0 555 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 C2orf42Q9NWW7 574 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 CRLS1Q9UJA2 301 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 NCKAP1Q9Y2A7 1128 aa12.11□□□□□ -0.47
HERC1-205ENST00000559886 TPP1O14773 563 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 PCDH8O95206 1070 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 PYGBP11216 843 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 BRAFP15056 766 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 PTGER3P43115 390 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 SERPINB8P50452 374 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 CSRP3P50461 194 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ADPRHP54922 357 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ADARP55265 1226 aaKnown RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 ZXDAP98168 799 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 SLC18A2Q05940 514 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ZNF284Q2VY69 593 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 RBM20Q5T481 1227 aaKnown RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 ZNF549Q6P9A3 640 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 NLRP8Q86W28 1048 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 C4orf33Q8N1A6 199 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 OR14C36Q8NHC7 312 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 HMGB4Q8WW32 186 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ULK4Q96C45 1275 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 NUS1Q96E22 293 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 KLF6Q99612 283 aaPredicted RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 SSU72Q9NP77 194 aaKnown RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 SNX15Q9NRS6 342 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 KCTD5Q9NXV2 234 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 TMPRSS11EQ9UL52 423 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 SLC39A10Q9ULF5 831 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 IGLON5A6NGN9 336 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 GOLGA8RI6L899 631 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 OR1I1O60431 355 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 TYK2P29597 1187 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 CCNFP41002 786 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 TPMTP51580 245 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 PPP2R2AP63151 447 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 POU4F1Q01851 419 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 DPTQ07507 201 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 USP10Q14694 798 aaKnown RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 AGERQ15109 404 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 GPATCH11Q8N954 259 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ALKBH8Q96BT7 664 aaKnown RBP12.1□□□□□ -0.47
HERC1-205ENST00000559886 ELMO2Q96JJ3 720 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 BIRC8Q96P09 236 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 CHRDQ9H2X0 955 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 KDM4CQ9H3R0 1056 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 CAB39LQ9H9S4 337 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 PREBQ9HCU5 417 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 ITM2CQ9NQX7 267 aa12.1□□□□□ -0.47
HERC1-205ENST00000559886 NCOR1O75376 2440 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 UBA6A0AVT1 1052 aaPredicted RBP12.09□□□□□ -0.47
HERC1-205ENST00000559886 FADS2P1A8MWK0 482 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 STK25O00506 426 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 TM7SF2O76062 418 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 RPS9P46781 194 aaKnown RBP12.09□□□□□ -0.47
HERC1-205ENST00000559886 KIAA1161Q6NSJ0 714 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 CMC1Q7Z7K0 106 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 SLC41A1Q8IVJ1 513 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 RBFAQ8N0V3 343 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 BANPQ8N9N5 519 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 FAM76AQ8TAV0 307 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 NDNQ99608 321 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 AARSD1Q9BTE6 412 aaKnown RBP12.09□□□□□ -0.47
HERC1-205ENST00000559886 P2RY12Q9H244 342 aa12.09□□□□□ -0.47
HERC1-205ENST00000559886 USP36Q9P275 1121 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms