RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TCEAL3Q969E4 200 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 LRRC39Q96DD0 335 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 HIC2Q96JB3 615 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 FCRL3Q96P31 734 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PHOX2BQ99453 314 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 WDR83Q9BRX9 315 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ANKZF1Q9H8Y5 726 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 RIMKLBQ9ULI2 386 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 VILLO15195 856 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 MTX2O75431 263 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 USP1O94782 785 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ASMTLO95671 621 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 MYCLP1P12525 358 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TRIM23P36406 574 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NHLH1Q02575 133 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ACVR1Q04771 509 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 CRYMQ14894 314 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NFATC4Q14934 902 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NUMA1Q14980 2115 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ERCC6LQ2NKX8 1250 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TPRG1LQ5T0D9 272 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ZNF648Q5T619 568 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PEAR1Q5VY43 1037 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ENPP7Q6UWV6 458 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 MARK2Q7KZI7 788 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NLRP8Q86W28 1048 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PHYKPLQ8IUZ5 450 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 SLC22A18ASQ8N1D0 253 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PEX13Q92968 403 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GLYATL1Q969I3 302 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 C9orf72Q96LT7 481 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NAT9Q9BTE0 207 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TEX101Q9BY14 249 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 FAM129AQ9BZQ8 928 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 FOXP3Q9BZS1 431 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 C20orf96Q9NUD7 363 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ANKRD6Q9Y2G4 727 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TMEM98Q9Y2Y6 226 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TEX264Q9Y6I9 313 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ANKRD36A6QL64 1941 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 E7ESA3 106 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 H7C0S8 307 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 EIF3HO15372 352 aaKnown RBP eCLIP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 MAGEC1O60732 1142 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 ECHS1P30084 290 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 AKT1P31749 480 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 CDKN1CP49918 316 aaPredicted RBP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 NXPH1P58417 271 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 YPEL5P62699 121 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 CACNG1Q06432 222 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 SPEM2Q0P670 501 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 OVGP1Q12889 678 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 KIF19Q2TAC6 998 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 FASTKD1Q53R41 847 aaKnown RBP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 ZNF542PQ5EBM4 170 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 PRAMEF14Q5SWL7 426 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 PDPK2PQ6A1A2 396 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 UNC5AQ6ZN44 842 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 SNX20Q7Z614 316 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 TMEM135Q86UB9 458 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 IQCHQ86VS3 1027 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 CCNJLQ8IV13 435 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 PALM2Q8IXS6 379 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 OR4L1Q8NH43 312 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 FAM174AQ8TBP5 190 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 BTN2A2Q8WVV5 523 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 C19orf43Q9BQ61 176 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 NUSAP1Q9BXS6 441 aaKnown RBP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 PPANQ9NQ55 473 aaKnown RBP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 SLC6A14Q9UN76 642 aa13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.93□□□□□ -0.18
VIPAS39-208ENST00000556412 ZCWPW2A0A1B0GU75 182 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TMEM202A6NGA9 273 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 KHNYNO15037 678 aaKnown RBP13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 SCAMP1O15126 338 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TTC4O95801 387 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TEAD1P28347 426 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 CA5AP35218 305 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 MAGEA4P43358 317 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 POLD2P49005 469 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 THOC5Q13769 683 aaKnown RBP13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 PTK2BQ14289 1009 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 LONRF1Q17RB8 773 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 SPANXN3Q5MJ09 141 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 GPRC6AQ5T6X5 926 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 ARMC3Q5W041 872 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 KIAA0930Q6ICG6 404 aaPredicted RBP13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 PSAPL1Q6NUJ1 521 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 RD3Q7Z3Z2 195 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 UNC5BQ8IZJ1 945 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 PNPLA1Q8N8W4 532 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 WDR92Q96MX6 357 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TTC25Q96NG3 672 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 VPS35Q96QK1 796 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 GTPBP2Q9BX10 602 aaKnown RBP13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 CATSPERZQ9NTU4 200 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 KLQ9UEF7 1012 aa13.92□□□□□ -0.18
VIPAS39-208ENST00000556412 TMPRSS11EQ9UL52 423 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms