RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SGSM3Q96HU1 749 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 SERPINB12Q96P63 405 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 IL22Q9GZX6 179 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 MRM3Q9HC36 420 aaKnown RBP14.37□□□□□ -0.11
CPSF1-206ENST00000531480 XAB2Q9HCS7 855 aaKnown RBP14.37□□□□□ -0.11
CPSF1-206ENST00000531480 BPIFA1Q9NP55 256 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 PIH1D1Q9NWS0 290 aaKnown RBP14.37□□□□□ -0.11
CPSF1-206ENST00000531480 VPS18Q9P253 973 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 ASIC3Q9UHC3 531 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 APPL1Q9UKG1 709 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 TCAF1Q9Y4C2 921 aa14.37□□□□□ -0.11
CPSF1-206ENST00000531480 DCHS1Q96JQ0 3298 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 GLYATL1P3A0A0U1RQE8 302 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 BHMG1C9JSJ3 638 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 RAD51CO43502 376 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 BUD23O43709 281 aaKnown RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 SEC31AO94979 1220 aaKnown RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 FUCA1P04066 466 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 CD59P13987 128 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 KELP23276 732 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 MCM3P25205 808 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 EPHA8P29322 1005 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 CCT8P50990 548 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 PEX6Q13608 980 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 PUM1Q14671 1186 aaKnown RBP eCLIP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 MORF4L2Q15014 288 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 ALG11Q2TAA5 492 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 ATP13A5Q4VNC0 1218 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 PCID2Q5JVF3 399 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 KCTD16Q68DU8 428 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 HIBCHQ6NVY1 386 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 ERMP1Q7Z2K6 904 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 MMGT1Q8N4V1 131 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 OR56A4Q8NGH8 313 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 BTN2A2Q8WVV5 523 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 GLYATL1Q969I3 302 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 DNAJC1Q96KC8 554 aaKnown RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 TRIM51Q9BSJ1 452 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 KIFC1Q9BW19 673 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 GTPBP2Q9BX10 602 aaKnown RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 SPATA16Q9BXB7 569 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 FGF22Q9HCT0 170 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 TM7SF3Q9NS93 570 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 TREX1Q9NSU2 369 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 BFARQ9NZS9 450 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 FKBPLQ9UIM3 349 aa14.36□□□□□ -0.11
CPSF1-206ENST00000531480 CDV3Q9UKY7 258 aaKnown RBP14.36□□□□□ -0.11
CPSF1-206ENST00000531480 ZFC3H1O60293 1989 aaKnown RBP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 TRBV5-4A0A0C4DH59 114 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 C4orf47A7E2U8 309 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 EFCAB8A8MWE9 144 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 GPR89AB7ZAQ6 455 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 PIAS2O75928 621 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SRP72O76094 671 aaKnown RBP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SLC4A1P02730 911 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 IVLP07476 585 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 GPR89BP0CG08 455 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 HK3P52790 923 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 ATXN3P54252 364 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SRP54P61011 504 aaKnown RBP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 HNRNPKP61978 463 aaKnown RBP eCLIP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 ITGA9Q13797 1035 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 CHRNA6Q15825 494 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SKIDA1Q1XH10 827 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 PRAMEF14Q5SWL7 426 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 TSTD2Q5T7W7 516 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 IZUMO3Q5VZ72 239 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 ALS2CLQ60I27 953 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 DUPD1Q68J44 220 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 AGGF1Q8N302 714 aaeCLIP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 DDHD1Q8NEL9 900 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 OR1E3Q8WZA6 343 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SEC14L1Q92503 715 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 UBXN4Q92575 508 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 SNF8Q96H20 258 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 CDKN2AIPNLQ96HQ2 116 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 ZNF778Q96MU6 729 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 ERP44Q9BS26 406 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 OAS3Q9Y6K5 1087 aaKnown RBP14.35□□□□□ -0.11
CPSF1-206ENST00000531480 CSNK1G3Q9Y6M4 447 aa14.35□□□□□ -0.11
CPSF1-206ENST00000531480 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-206ENST00000531480 PRSS38A1L453 326 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 PCNX2A6NKB5 2137 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 NDC80O14777 642 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 SLC30A4O14863 429 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 CHUKO15111 745 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 DNAJC6O75061 913 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 AVILO75366 819 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 PRAMEF1O95521 474 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 GIMD1P0DJR0 217 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 KCNA4P22459 653 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 CA5AP35218 305 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 RPL21P46778 160 aaKnown RBP14.34□□□□□ -0.11
CPSF1-206ENST00000531480 BLKP51451 505 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 ARSDP51689 593 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 DRG2P55039 364 aaKnown RBP14.34□□□□□ -0.11
CPSF1-206ENST00000531480 SESN2P58004 480 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-206ENST00000531480 PPARDQ03181 441 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 NFATC2Q13469 925 aa14.34□□□□□ -0.11
CPSF1-206ENST00000531480 CCDC38Q502W7 563 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms