RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GLYATL1P3A0A0U1RQE8 302 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 C16orf96A6NNT2 1141 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 UPK3BL1B0FP48 263 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 UPK3BL2E5RIL1 263 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 G3V2L1 256 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 TK2O00142 265 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 EBAG9O00559 213 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 PFDN6O15212 129 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SBK3P0C264 359 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 FGF3P11487 239 aaPredicted RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 CYP2A6P11509 494 aaPredicted RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 CPA3P15088 417 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SOX9P48436 509 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 BST1Q10588 318 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 HTR4Q13639 388 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CSHL1Q14406 222 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CHRNA6Q15825 494 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 TSNAXIP1Q2TAA8 658 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ATG16L1Q676U5 607 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SERPINA13PQ6UXR4 307 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ZCCHC23Q6ZST2 131 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SPATA21Q7Z572 469 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 GPR26Q8NDV2 337 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 HCAR2Q8TDS4 363 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ANKRD49Q8WVL7 239 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-252ENST00000636907 PBXIP1Q96AQ6 731 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 GRAMD1AQ96CP6 724 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SCYL1Q96KG9 808 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 BIRC8Q96P09 236 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 TMEM245Q9H330 911 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ASB8Q9H765 288 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 PCDH12Q9NPG4 1184 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ZDHHC4Q9NPG8 344 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CPSF2Q9P2I0 782 aaKnown RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 CD207Q9UJ71 328 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 H3BQ06 376 aaPredicted RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 APOA4P06727 396 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CCDC166P0CW27 439 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 ITGALP20701 1170 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 VIPR1P32241 457 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 GRIA2P42262 883 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 IL12RB1P42701 662 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SUOXP51687 545 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 NFATC2Q13469 925 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CTSL3PQ5NE16 218 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 RFLNAQ6ZTI6 216 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SNX20Q7Z614 316 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 SERPINA9Q86WD7 417 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 FSTL5Q8N475 847 aaPredicted RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 UBXN10Q96LJ8 280 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 CCDC68Q9H2F9 335 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 FBRSL1Q9HCM7 1045 aaKnown RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 THAP10Q9P2Z0 257 aaPredicted RBP16.78■□□□□ 0.28
CLN3-252ENST00000636907 XPR1Q9UBH6 696 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 MED16Q9Y2X0 877 aa16.78■□□□□ 0.28
CLN3-252ENST00000636907 XIRP2A4UGR9 3374 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 TCF20Q9UGU0 1960 aaKnown RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 TRBV5-4A0A0C4DH59 114 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 GOLGA8CPA6NN73 597 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 ANHXE9PGG2 379 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 RHOBTB1O94844 696 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 IL1BP01584 269 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 PRNPP04156 253 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 APODP05090 189 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 LTA4HP09960 611 aaKnown RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 PKMP14618 531 aaKnown RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 UGT1A6P19224 532 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 UGT1A1P22309 533 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 UGT1A4P22310 534 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 UGT1A3P35503 534 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 UGT1A5P35504 534 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 PTGER3P43115 390 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 PTPN5P54829 565 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 ARHGEF7Q14155 803 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 PARS2Q7L3T8 475 aaKnown RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 CCDC91Q7Z6B0 441 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 TTC7BQ86TV6 843 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 PPP1R14CQ8TAE6 165 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 ZNF398Q8TD17 642 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 OR8D1Q8WZ84 308 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 FAM136AQ96C01 138 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 THOC1Q96FV9 657 aaKnown RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 ACOX2Q99424 681 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 ZNF395Q9H8N7 513 aaPredicted RBP16.77■□□□□ 0.28
CLN3-252ENST00000636907 POPDC3Q9HBV1 291 aa16.77■□□□□ 0.28
CLN3-252ENST00000636907 SPTBN5Q9NRC6 3674 aaKnown RBP16.77■□□□□ 0.27
CLN3-252ENST00000636907 TARM1B6A8C7 271 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 KPNA3O00505 521 aaPredicted RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 SNNO75324 88 aaPredicted RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 MYL2P10916 166 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 ZNF30P17039 623 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 XPAP23025 273 aaPredicted RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 SPINT3P49223 89 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 METAP1P53582 386 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 OVGP1Q12889 678 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 STX3Q13277 289 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 ELAVL3Q14576 367 aaKnown RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 FAM83EQ2M2I3 478 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 PREPLQ4J6C6 727 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms