RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 GOLGA6L19H0YKK7 550 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 MATN3O15232 486 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 SOD1P00441 154 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 HLA-DQB2P05538 268 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 CSTF2P33240 577 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 MAPK9P45984 424 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 TAS2R40P59535 323 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 NIPAL4Q0D2K0 466 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 PEX6Q13608 980 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 IHHQ14623 411 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 IFI16Q16666 785 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 TIGD7Q6NT04 549 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 CHST15Q7LFX5 561 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 KDELC2Q7Z4H8 507 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 C17orf82Q86X59 251 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 FAM129CQ86XR2 697 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 LRRC49Q8IUZ0 686 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 SYN2Q92777 582 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 PMEPA1Q969W9 287 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC38A3Q99624 504 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 FAM117AQ9C073 453 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 TMEM9Q9P0T7 183 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 IFNKQ9P0W0 207 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 RCOR3Q9P2K3 495 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 CAPN11Q9UMQ6 739 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 PPIL1Q9Y3C6 166 aa17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 HEMK1Q9Y5R4 338 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-223ENST00000600552 FZD6O60353 706 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 SNX2O60749 519 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 JCHAINP01591 159 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC4A1P02730 911 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 FAM87AP0C7U9 286 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 FGF3P11487 239 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 WT1P19544 449 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 TEAD1P28347 426 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 GPR3P46089 330 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ARSEP51690 589 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 STC1P52823 247 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 NFKB2Q00653 900 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 GBE1Q04446 702 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 PAFAH1B3Q15102 231 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 LINC00303Q3SY05 128 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 PYCR3Q53H96 274 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ZNF438Q7Z4V0 828 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 NRSN1Q8IZ57 195 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 EXD1Q8NHP7 514 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ART4Q93070 314 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 FUCA2Q9BTY2 467 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 PCDH9Q9HC56 1237 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ARFGAP3Q9NP61 516 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 HAUS2Q9NVX0 235 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC39A1Q9NY26 324 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ACSL6Q9UKU0 697 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 PCDHGA4Q9Y5G9 962 aa17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 ZFC3H1O60293 1989 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-223ENST00000600552 IGHV1OR21-1A0A087WYE8 117 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 C1orf232A0A0U1RR37 186 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 EFCAB7A8K855 629 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 EML2O95834 649 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 ZNF30P17039 623 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 CA4P22748 312 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 CCNCP24863 283 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 CSF2RBP32927 897 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 PBX1P40424 430 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 CD86P42081 329 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 LIMK2P53671 638 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 NFATC2Q13469 925 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 MAP7D3Q8IWC1 876 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC37A2Q8TED4 501 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 MAML1Q92585 1016 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 TAAR9Q96RI9 348 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 TDRD1Q9BXT4 1180 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 PACSIN1Q9BY11 444 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 TRIM4Q9C037 500 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 OCIAD1Q9NX40 245 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 KCNK6Q9Y257 313 aa17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 OAS3Q9Y6K5 1087 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-223ENST00000600552 SDK2Q58EX2 2172 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 KCNK1O00180 336 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 HGSO14964 777 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 PROSCO94903 275 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 PRLP01236 227 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ACP5P13686 325 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 CES1P23141 567 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 CASP14P31944 242 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ATP1A2P50993 1020 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 MESDQ14696 234 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 PDK2Q15119 407 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 TBR1Q16650 682 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ZNF648Q5T619 568 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ALS2CLQ60I27 953 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ZNF765Q7L2R6 523 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 CCDC13Q8IYE1 715 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 IL22RA1Q8N6P7 574 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 PQLC3Q8N755 202 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 AGBL5Q8NDL9 886 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 CCDC112Q8NEF3 446 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 OR4D9Q8NGE8 314 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ARRDC2Q8TBH0 407 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 FAM71BQ8TC56 605 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms