RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 WASF2Q9Y6W5 498 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ABHD14A-ACY1A0A1B0GW23 586 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 DYTNA2CJ06 578 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 GRXCR2A6NFK2 248 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 EIF4E1BA6NMX2 242 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 PSMD12O00232 456 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 AIM2O14862 343 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 SOCS5O75159 536 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 GPC4O75487 556 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 RHOBTB1O94844 696 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 MLYCDO95822 493 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KLKB1P03952 638 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 SNRPB2P08579 225 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 PKMP14618 531 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 PCSK2P16519 638 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KCNA5P22460 613 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 HSPA13P48723 471 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 EPHB3P54753 998 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 SESN3P58005 492 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 LCP2Q13094 533 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 GALNT3Q14435 633 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 SEMA3AQ14563 771 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 UGT3A2Q3SY77 523 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 OGFRL1Q5TC84 451 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 SPATA19Q7Z5L4 167 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 DDX53Q86TM3 631 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 GALNT13Q8IUC8 556 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 GATA6Q92908 595 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ACDQ96AP0 544 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 PTERQ96BW5 349 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ASB9Q96DX5 294 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 VN1R3Q9BXE9 311 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 OCEL1Q9H607 264 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 PDP2Q9P2J9 529 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 LHX3Q9UBR4 397 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 PPM1HQ9ULR3 514 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KCTD3Q9Y597 815 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 OR51B4Q9Y5P0 310 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 MTCL1Q9Y4B5 1905 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 H3BMM5 538 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 H3BNX3 289 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 AZIN1O14977 448 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 ADAM12O43184 909 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SRP72O76094 671 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 SEC24AO95486 1093 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 MTHFD2P13995 350 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PPM1AP35813 382 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 CCR10P46092 362 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 RPS24P62847 133 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 ARF5P84085 180 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 LRP8Q14114 963 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 FASTKQ14296 549 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 TAF12Q16514 161 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 FOXB2Q5VYV0 432 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 RNF219Q5W0B1 726 aaPredicted RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 ANKS6Q68DC2 871 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 HPS6Q86YV9 775 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 CFAP52Q8N1V2 620 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PTGR2Q8N8N7 351 aaPredicted RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 PCYOX1LQ8NBM8 494 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PHC3Q8NDX5 983 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 ADCY4Q8NFM4 1077 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 GRIN3AQ8TCU5 1115 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SLC26A7Q8TE54 656 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 RMDN1Q96DB5 314 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 C19orf60Q96EN9 201 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 TMEM169Q96HH4 297 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 TTC1Q99614 292 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SPON2Q9BUD6 331 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 MUC13Q9H3R2 512 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 RC3H2Q9HBD1 1191 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 CYP4F11Q9HBI6 524 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 DNAAF2Q9NVR5 837 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 KLHL42Q9P2K6 505 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SCOCQ9UIL1 159 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 NDUFAF1Q9Y375 327 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SPO11Q9Y5K1 396 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 NEMP2A6NFY4 417 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SOBPA7XYQ1 873 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 NT5C1B-RDH14C9J2C7 533 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 STX7O15400 261 aaKnown RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 SUPT7LO94864 414 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 TMCC1O94876 653 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 URODP06132 367 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SCNN1BP51168 640 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PKNOX1P55347 436 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 CACNG1Q06432 222 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 FLOT2Q14254 428 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 TTC23LQ6PF05 361 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 IZUMO2Q6UXV1 221 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PRR23BQ6ZRT6 265 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 RTL10Q7L3V2 364 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 PQLC1Q8N2U9 271 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 FBXO39Q8N4B4 442 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 MDGA1Q8NFP4 955 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 OR4K2Q8NGD2 314 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 OR52K2Q8NGK3 314 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 AGR3Q8TD06 166 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 SGF29Q96ES7 293 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 ZFRQ96KR1 1074 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms