RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ATL1Q8WXF7 558 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GORASP1Q9BQQ3 440 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SPATA16Q9BXB7 569 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 FAM83DQ9H4H8 585 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CAB39LQ9H9S4 337 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SPATS2LQ9NUQ6 558 aaKnown RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 TAGLN3Q9UI15 199 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 FAM50BQ9Y247 325 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 WASH3PC4AMC7 463 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PIAS1O75925 651 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SUPT7LO94864 414 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 THRAP10827 490 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CEBPBP17676 345 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CTPS1P17812 591 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PTPN4P29074 926 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PRDX6P30041 224 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CD70P32970 193 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SATB1Q01826 763 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 OLIG2Q13516 323 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ZNF805Q5CZA5 627 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 TTC7BQ86TV6 843 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 FSTL5Q8N475 847 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 EXT2Q93063 718 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ZNF514Q96K75 400 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 SLC22A12Q96S37 553 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 LYSMD1Q96S90 227 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ZDHHC4Q9NPG8 344 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 LATS2Q9NRM7 1088 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ELOVL2Q9NXB9 296 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PTPRDP23468 1912 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KPNA3O00505 521 aaPredicted RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 CLGNO14967 610 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KATNA1O75449 491 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 PIRTP0C851 137 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 GTF2A1P52655 376 aaPredicted RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 OVGP1Q12889 678 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 METTL2BQ6P1Q9 378 aaKnown RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 C6orf89Q6UWU4 347 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 TMEM25Q86YD3 366 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 PARP9Q8IXQ6 854 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 OR13J1Q8NGT2 312 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 CEP70Q8NHQ1 597 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 DTX3LQ8TDB6 740 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 CXorf40AQ8TE69 158 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 NXNL1Q96CM4 212 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 MYCBPQ99417 103 aaPredicted RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 TNKS2Q9H2K2 1166 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 TCF7L2Q9NQB0 619 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 OR51B4Q9Y5P0 310 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 SETMARQ53H47 684 aaPredicted RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 PPM1JQ5JR12 505 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 PRSS36Q5K4E3 855 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 C16orf89Q6UX73 402 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 PACS2Q86VP3 889 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 SERPINA9Q86WD7 417 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 GANCQ8TET4 914 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KLHL32Q96NJ5 620 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 NDNQ99608 321 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 TRMT61BQ9BVS5 477 aaKnown RBP8.35□□□□□ -1.07
USP54-203ENST00000418501 HCFC1R1Q9NWW0 138 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 IL17CQ9P0M4 197 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 NLRC5Q86WI3 1866 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KLHL33A6NCF5 533 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 HEPACAM2A8MVW5 462 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KERAO60938 352 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 PIGNO95427 931 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 ELFN1P0C7U0 828 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 GLDCP23378 1020 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 NAGLUP54802 743 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 OCRLQ01968 901 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 ACOX1Q15067 660 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 RBBP7Q16576 425 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 ITPRIPL2Q3MIP1 535 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 CDKL4Q5MAI5 379 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 LYSMD3Q7Z3D4 306 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 CLEC14AQ86T13 490 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 TMIEQ8NEW7 156 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 MAGEC3Q8TD91 643 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 MCOLN3Q8TDD5 553 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 C10orf82Q8WW14 230 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 KIAA1191Q96A73 305 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 ALG9Q9H6U8 611 aa8.35□□□□□ -1.07
USP54-203ENST00000418501 STX16-NPEPL1H3BU86 382 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 BTN3A1O00481 513 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 STX16O14662 325 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SCAMP3O14828 347 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 CHUKO15111 745 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 UBOX5O94941 541 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 UNC5CO95185 931 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 RPN2P04844 631 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 KRT16P08779 473 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 ENO2P09104 434 aaPredicted RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 IMPDH1P20839 514 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 GRIA2P42262 883 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 STX5Q13190 355 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 PCLAFQ15004 111 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SHHQ15465 462 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 ANKRD54Q6NXT1 300 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MTDHQ86UE4 582 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 ADGRG2Q8IZP9 1017 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms