RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 DYRK4Q9NR20 520 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 SUN2Q9UH99 717 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 DCDC2Q9UHG0 476 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 MTF2Q9Y483 593 aaPredicted RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 TCP11X1B4DZS4 312 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 SYNCRIPO60506 623 aaKnown RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 VIMP08670 466 aaKnown RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 TNFRSF4P43489 277 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 KIR2DL1P43626 348 aaPredicted RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 GLRBP48167 497 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 TTPAP49638 278 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 TFF2Q03403 129 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 SF3A3Q12874 501 aaKnown RBP eCLIP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 NFATC2Q13469 925 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 ZKSCAN8Q15776 578 aaPredicted RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 PRPF38BQ5VTL8 546 aaKnown RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 PTCRAQ6ISU1 281 aaPredicted RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 ZNF549Q6P9A3 640 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 GALNT7Q86SF2 657 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 KCTD4Q8WVF5 259 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 CKAP2Q8WWK9 683 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 LPGAT1Q92604 370 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 CCDC97Q96F63 343 aaPredicted RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 EPN3Q9H201 632 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 INTS10Q9NVR2 710 aaKnown RBP12.4□□□□□ -0.42
CHMP3-204ENST00000409727 MKS1Q9NXB0 559 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 TMEM216Q9P0N5 145 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 DKK3Q9UBP4 350 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 CRLS1Q9UJA2 301 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 APPL1Q9UKG1 709 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 VWA7Q9Y334 891 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 STARD13Q9Y3M8 1113 aa12.4□□□□□ -0.42
CHMP3-204ENST00000409727 ATG2BQ96BY7 2078 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 GMNCA6NCL1 334 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 C19orf67A6NJJ6 358 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 NEMP1O14524 444 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ITGALP20701 1170 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 CD72P21854 359 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 NFKBIAP25963 317 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ITGB7P26010 798 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ETV3P41162 512 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ETV4P43268 484 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 SPINT3P49223 89 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 RALGDSQ12967 914 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 SMAD2Q15796 467 aaKnown RBP12.39□□□□□ -0.43
CHMP3-204ENST00000409727 AARS2Q5JTZ9 985 aaKnown RBP12.39□□□□□ -0.43
CHMP3-204ENST00000409727 DSG4Q86SJ6 1040 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 SERPINA9Q86WD7 417 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 RALGPS2Q86X27 583 aaPredicted RBP12.39□□□□□ -0.43
CHMP3-204ENST00000409727 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.39□□□□□ -0.43
CHMP3-204ENST00000409727 PPP1R16AQ96I34 528 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 CABS1Q96KC9 395 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 TSNARE1Q96NA8 513 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 CCDC68Q9H2F9 335 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 GPAMQ9HCL2 828 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.39□□□□□ -0.43
CHMP3-204ENST00000409727 EMCNQ9ULC0 261 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 FAM50BQ9Y247 325 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 ACOT9Q9Y305 439 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 SCN8AQ9UQD0 1980 aa12.39□□□□□ -0.43
CHMP3-204ENST00000409727 C1QTNF3-AMACRE9PGA6 284 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 PFDN6O15212 129 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 ELFN1P0C7U0 828 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 ADRB3P13945 408 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 HNRNPLP14866 589 aaKnown RBP eCLIP12.38□□□□□ -0.43
CHMP3-204ENST00000409727 IL9P15248 144 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 ZNF30P17039 623 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 CRABP2P29373 138 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 MMP12P39900 470 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SERPINB4P48594 390 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 GRSF1Q12849 480 aaKnown RBP eCLIP12.38□□□□□ -0.43
CHMP3-204ENST00000409727 CSHL1Q14406 222 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 ACOX1Q15067 660 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 DBN1Q16643 649 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 FAM45BPQ6NSW5 357 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 KIAA1211LQ6NV74 962 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 Q6ZVL8 140 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 DPPA4Q7L190 304 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SNX20Q7Z614 316 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SUGP1Q8IWZ8 645 aaKnown RBP12.38□□□□□ -0.43
CHMP3-204ENST00000409727 FAM45AQ8TCE6 357 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 ZNF398Q8TD17 642 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 BCAS4Q8TDM0 211 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 HCAR2Q8TDS4 363 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SCAMP4Q969E2 229 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 CHMP6Q96FZ7 201 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SCYL1Q96KG9 808 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 MAGEB18Q96M61 343 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 TCF12Q99081 682 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 BOCQ9BWV1 1114 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SPATA16Q9BXB7 569 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 PKD2L2Q9NZM6 624 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 CPSF2Q9P2I0 782 aaKnown RBP12.38□□□□□ -0.43
CHMP3-204ENST00000409727 RUVBL2Q9Y230 463 aaKnown RBP12.38□□□□□ -0.43
CHMP3-204ENST00000409727 COQ6Q9Y2Z9 468 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 IQCF5A8MTL0 148 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 MID1O15344 667 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 SPINT1O43278 529 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 RHOBTB1O94844 696 aa12.38□□□□□ -0.43
CHMP3-204ENST00000409727 KLF8O95600 359 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms