RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 PCDHA3Q9Y5H8 950 aa17.69■□□□□ 0.42
SHKBP1-204ENST00000594862 ANKRD11Q6UB99 2663 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 APOC4-APOC2K7ER74 178 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 APOC2P02655 101 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 IVLP07476 585 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 PECAM1P16284 738 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 PTPN3P26045 913 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 CTNNA2P26232 953 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 RWDD2BP57060 319 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 CDK18Q07002 472 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 IHHQ14623 411 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 RTP5Q14D33 572 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 QPCTQ16769 361 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 TAF8Q7Z7C8 310 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 UBE2Q2Q8WVN8 375 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 TADA1Q96BN2 335 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 QKIQ96PU8 341 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 LGR4Q9BXB1 951 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 CAAP1Q9H8G2 361 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 CARS2Q9HA77 564 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 TRHDEQ9UKU6 1024 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 TFR2Q9UP52 801 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 SLC17A4Q9Y2C5 497 aa17.68■□□□□ 0.42
SHKBP1-204ENST00000594862 SRRM3A6NNA2 597 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 MIF4GDA9UHW6 222 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 MARCKSL1P49006 195 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 GSDMDP57764 484 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 UBL4BQ8N7F7 174 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 KYQ8NBH2 561 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 ACRBPQ8NEB7 543 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 MDM1Q8TC05 714 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 HTR3CQ8WXA8 447 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 KRT35Q92764 455 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 HIC2Q96JB3 615 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 TRIB3Q96RU7 358 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 CEP41Q9BYV8 373 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 MAGEE1Q9HCI5 957 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 KLHL8Q9P2G9 620 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 NFKBIL1Q9UBC1 381 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 GULP1Q9UBP9 304 aa17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 REXO2Q9Y3B8 237 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 GOLGA4Q13439 2230 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-204ENST00000594862 RCCD1A6NED2 376 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 ZW10O43264 779 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 STK10O94804 968 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 CLDN7O95471 211 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 NDST3O95803 873 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 CEACAM5P06731 702 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 CELA2BP08218 269 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 SPINT3P49223 89 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 DCDC1P59894 354 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 LRP8Q14114 963 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 RBM44Q6ZP01 1051 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 ZC3H18Q86VM9 953 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 TMEM139Q8IV31 216 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 CDKL3Q8IVW4 592 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 LSMEM2Q8N112 164 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 PELI3Q8N2H9 469 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 FAM46DQ8NEK8 389 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 GPBAR1Q8TDU6 330 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 HAUS1Q96CS2 278 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 PPP1R2P1Q96PQ5 205 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 RIOK2Q9BVS4 552 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 TMEM168Q9H0V1 697 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 FAM83DQ9H4H8 585 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 ZFYVE1Q9HBF4 777 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 MRPL40Q9NQ50 206 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 VPS18Q9P253 973 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 SAE1Q9UBE0 346 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 FAM153AQ9UHL3 310 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 CD84Q9UIB8 345 aa17.66■□□□□ 0.42
SHKBP1-204ENST00000594862 MYLKQ15746 1914 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 CSO75390 466 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 TJP3O95049 919 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 SOD1P00441 154 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 EPOP01588 193 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 MYF5P13349 255 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 PNLIPP16233 465 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 CYP4F3Q08477 520 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 WASHC5Q12768 1159 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 SPIDRQ14159 915 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 GALNT3Q14435 633 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 NOMO1Q15155 1222 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 PTPRRQ15256 657 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 PCSK7Q16549 785 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 C14orf28Q4W4Y0 310 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 PDPK2PQ6A1A2 396 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 ITPRIPL1Q6GPH6 555 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 OGFOD3Q6PK18 319 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 PEX26Q7Z412 305 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 MARCH9Q86YJ5 346 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 LRRC57Q8N9N7 239 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 GPR156Q8NFN8 814 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 SCAMP4Q969E2 229 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 SCARF2Q96GP6 870 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 OR2M4Q96R27 311 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 CCDC3Q9BQI4 270 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 OSBPL8Q9BZF1 889 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 TSGA10Q9BZW7 698 aa17.65■□□□□ 0.42
SHKBP1-204ENST00000594862 LACRTQ9GZZ8 138 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms