RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SLC35G2Q8TBE7 412 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ARRDC2Q8TBH0 407 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 KIAA1524Q8TCG1 905 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 PATE1Q8WXA2 126 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 LIN37Q96GY3 246 aaPredicted RBP10.19□□□□□ -0.78
LDLR-214ENST00000560628 TMEM74Q96NL1 305 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 RNF157Q96PX1 679 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 DNAJC7Q99615 494 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ZNF670Q9BS34 389 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 RIOK2Q9BVS4 552 aaKnown RBP10.19□□□□□ -0.78
LDLR-214ENST00000560628 GSDMCQ9BYG8 508 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 DPH1Q9BZG8 443 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 SPTLC3Q9NUV7 552 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ZNHIT6Q9NWK9 470 aaKnown RBP10.19□□□□□ -0.78
LDLR-214ENST00000560628 DTLQ9NZJ0 730 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 PISDQ9UG56 409 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 HEY1Q9Y5J3 304 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ST14Q9Y5Y6 855 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 PTPRQQ9UMZ3 2332 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 UNC13CQ8NB66 2214 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 TEX51A0A1B0GUA7 166 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 LRRD1A4D1F6 860 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 RHPN2P1A8MT19 583 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 KCNK1O00180 336 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 CBFA2T2O43439 604 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 NUDT21O43809 227 aaKnown RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 ASMTLO95671 621 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 SOD1P00441 154 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 IVLP07476 585 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 ITGA2BP08514 1039 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 TMEM253P0C7T8 217 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 JMJD7P0C870 316 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 TNNT1P13805 278 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 PNLIPP16233 465 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 ITIH1P19827 911 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 MX2P20592 715 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 PTMSP20962 102 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 CES1P23141 567 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 SLC5A2P31639 672 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 STC1P52823 247 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 SKOR1P84550 965 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 ZFP36L1Q07352 338 aaKnown RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 BIRC2Q13490 618 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 PHF19Q5T6S3 580 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 ADAMTSL4Q6UY14 1074 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 B4GALNT4Q76KP1 1039 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 KDELC2Q7Z4H8 507 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 CLEC14AQ86T13 490 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 CCDC13Q8IYE1 715 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 RNF214Q8ND24 703 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 FAF2Q96CS3 445 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 CCDC97Q96F63 343 aaPredicted RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 TDRD1Q9BXT4 1180 aaKnown RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 SEMA6CQ9H3T2 930 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 NHEJ1Q9H9Q4 299 aaPredicted RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 RDH14Q9HBH5 336 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 PCDH9Q9HC56 1237 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 TRNAU1APQ9NX07 287 aaKnown RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 SLC17A4Q9Y2C5 497 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 LOXL2Q9Y4K0 774 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 HYOU1Q9Y4L1 999 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 COL27A1Q8IZC6 1860 aaPredicted RBP10.18□□□□□ -0.78
LDLR-214ENST00000560628 ITPR1Q14643 2758 aa10.18□□□□□ -0.78
LDLR-214ENST00000560628 LRP4O75096 1905 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 SSU72P8A0A1W2PR75 194 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CAPN8A6NHC0 703 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ATP1A1P05023 1023 aaKnown RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 MMP2P08253 660 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TPM1P09493 284 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ZNF30P17039 623 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TEAD1P28347 426 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CCKBRP32239 447 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 MAN1A1P33908 653 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ETV5P41161 510 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ACTR1BP42025 376 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CD86P42081 329 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 UCNP55089 124 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ACTR1AP61163 376 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 VAC14Q08AM6 782 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 AP1B1Q10567 949 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ZBTB17Q13105 803 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CLN3Q13286 438 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TRIM14Q14142 442 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TGIF1Q15583 401 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 QPCTQ16769 361 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 SKOR2Q2VWA4 1001 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 MAP9Q49MG5 647 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TAF1BQ53T94 588 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 NKAIN2Q5VXU1 208 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ALG1LQ6GMV1 187 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 PCSK4Q6UW60 755 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 NPNTQ6UXI9 565 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 PIM3Q86V86 326 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 C17orf82Q86X59 251 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 VSTM4Q8IW00 320 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 NRSN1Q8IZ57 195 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 NAGSQ8N159 534 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CNTD1Q8N815 330 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms