RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PEBP4Q96S96 227 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 SLC38A3Q99624 504 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 SNRNP25Q9BV90 132 aaKnown RBP6.56□□□□□ -1.36
CD44-221ENST00000526000 HSD3B7Q9H2F3 369 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 GPN2Q9H9Y4 310 aaPredicted RBP6.56□□□□□ -1.36
CD44-221ENST00000526000 NOD2Q9HC29 1040 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 ARFGAP3Q9NP61 516 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 ETNK2Q9NVF9 386 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 MYO1AQ9UBC5 1043 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 ZNHIT2Q9UHR6 403 aa6.56□□□□□ -1.36
CD44-221ENST00000526000 DOCK4Q8N1I0 1966 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 MAST4O15021 2626 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ARHGEF17Q96PE2 2063 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 A0A1B0GTH6 734 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 TCRBV5S1A1TA0A578 114 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 BLACEA4D250 179 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CFAP69A5D8W1 941 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 NPIPB15A6NHN6 443 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 ZNF891A8MT65 544 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 FGF10O15520 208 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 KATNA1O75449 491 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CPP00450 1065 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 SERPINC1P01008 464 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ATP1A1P05023 1023 aaKnown RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 PDHA1P08559 390 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 HOXC4P09017 264 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 MYCLP1P12525 358 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 LHCGRP22888 699 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CD82P27701 267 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 OAS2P29728 719 aaKnown RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 MIPP30301 263 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 VIPR1P32241 457 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CSNK1DP48730 415 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 SEPHS1P49903 392 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 MLLT10P55197 1068 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CDK3Q00526 305 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 FANCCQ00597 558 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 UBXN1Q04323 297 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 FOXM1Q08050 763 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 IL10RBQ08334 325 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 TRAF2Q12933 501 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 MAMLD1Q13495 774 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ZNF235Q14590 738 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 TSR1Q2NL82 804 aaKnown RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 C4orf17Q53FE4 359 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ZNF648Q5T619 568 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 TMEM71Q6P5X7 295 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 RFX8Q6ZV50 586 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 CHST15Q7LFX5 561 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 LUZP1Q86V48 1076 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 C17orf82Q86X59 251 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 OR4D9Q8NGE8 314 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 C9orf43Q8TAL5 461 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 HSPH1Q92598 858 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ZNF653Q96CK0 615 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 DTD2Q96FN9 168 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ABHD17AQ96GS6 310 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 OR2M4Q96R27 311 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ERGIC2Q96RQ1 377 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 TBC1D10AQ9BXI6 508 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 TEX101Q9BY14 249 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 FRMD8Q9BZ67 464 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 ABCG8Q9H221 673 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 ZWILCHQ9H900 591 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 NT5MQ9NPB1 228 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 RTN4Q9NQC3 1192 aaKnown RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 CWC15Q9P013 229 aaKnown RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 KCNK6Q9Y257 313 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 SIK3Q9Y2K2 1263 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 PCYT1BQ9Y5K3 369 aaPredicted RBP6.55□□□□□ -1.36
CD44-221ENST00000526000 ATMQ13315 3056 aa6.55□□□□□ -1.36
CD44-221ENST00000526000 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 PRR19A6NJB7 356 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 HGSO14964 777 aaPredicted RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 ZW10O43264 779 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PRPSAP2O60256 369 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 ABCB7O75027 752 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 RNF8O76064 485 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 STK17BO94768 372 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 THRAP10827 490 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 CYP2A6P11509 494 aaPredicted RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 TCF4P15884 667 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 ZNF28P17035 718 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TYRP1P17643 537 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 CR2P20023 1033 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TCN2P20062 427 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 F8A1P23610 371 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 GPR3P46089 330 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 RENBPP51606 427 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 UBASH3AP57075 661 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 AP1S1P61966 158 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 FOXK1P85037 733 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 NSUN2Q08J23 767 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-221ENST00000526000 TRA2AQ13595 282 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-221ENST00000526000 ERV3-1Q14264 604 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 SMTNL2Q2TAL5 461 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PYCR3Q53H96 274 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 FIGNQ5HY92 759 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PPP1R15BQ5SWA1 713 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 ARMC12Q5T9G4 340 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms