RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 IFNA2P01563 188 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 TFEBP19484 476 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 MAGP20916 626 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 PDHA2P29803 388 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 ALDH4A1P30038 563 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 CEBPGP53567 150 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 LIMK2P53671 638 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 VAMP2P63027 116 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 TAPT1Q6NXT6 567 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 BBS12Q6ZW61 710 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 GLT6D1Q7Z4J2 308 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 TDRPQ86YL5 185 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 OR5K1Q8NHB7 308 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 HEXDCQ8WVB3 486 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF606Q8WXB4 792 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 FBXO32Q969P5 355 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 ZSCAN5AQ9BUG6 496 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 PLA2G12BQ9BX93 195 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 FETUBQ9UGM5 382 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 VPS28Q9UK41 221 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 RPH3AQ9Y2J0 694 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 PCDHGB2Q9Y5G2 931 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 BTBD19C9JJ37 291 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TNFRSF11BO00300 401 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ENTPD3O75355 529 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PPM1BO75688 479 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 HOXC6P09630 235 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 NUDT7P0C024 238 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PRDX5P30044 214 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 GDI2P50395 445 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PNLIPRP1P54315 467 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 GIT2Q14161 759 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 SYT16Q17RD7 645 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 AHSA2Q719I0 299 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF354BQ96LW1 612 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 COPS4Q9BT78 406 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 CPVLQ9H3G5 476 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 A0A087WZ62 844 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ENTPD6O75354 484 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 IGSF6O95976 241 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 IFNW1P05000 195 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 KDELR1P24390 212 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC7A1P30825 629 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TAS2R41P59536 307 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PLEKHN1Q494U1 663 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PABPC1LQ4VXU2 614 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TMEM53Q6P2H8 277 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 CHRDL2Q6WN34 429 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 GPR65Q8IYL9 337 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PLEKHO2Q8TD55 490 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ACTR6Q9GZN1 396 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 MMP27Q9H306 513 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ALG9Q9H6U8 611 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 LGALS13Q9UHV8 139 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 BCS1LQ9Y276 419 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ATP10BO94823 1461 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 GCATO75600 419 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 HNRNPH3P31942 346 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF311Q5JNZ3 666 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ATXN7L2Q5T6C5 722 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 OGFRL1Q5TC84 451 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 USP30Q70CQ3 517 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TOMM5Q8N4H5 51 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 LINC00471Q8N535 108 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 NEK7Q8TDX7 302 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ASB15Q8WXK1 588 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 KAT2BQ92831 832 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 C1QTNF7Q9BXJ2 289 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ASB7Q9H672 318 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 DBNDD1Q9H9R9 158 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PLA2G4CQ9UP65 541 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PLLPQ9Y342 182 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 HSPB11Q9Y547 144 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TRPV2Q9Y5S1 764 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 SSX4O60224 188 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 KERAO60938 352 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 MAGEA6P43360 314 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 BAG6P46379 1132 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ZCCHC12Q6PEW1 402 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 UNC5AQ6ZN44 842 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ATG9AQ7Z3C6 839 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TRMT11Q7Z4G4 463 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 ECHDC2Q86YB7 292 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 FAM98AQ8NCA5 519 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 GLB1L3Q8NCI6 653 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 OR6J1Q8NGC5 347 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 TCEAL3Q969E4 200 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 PHOX2BQ99453 314 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC39A1Q9NY26 324 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 MINPP1Q9UNW1 487 aa11.2□□□□□ -0.62
LIMCH1-208ENST00000508501 C2orf71A6NGG8 1288 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 DISC1C4P0D8 188 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 AZGP1P25311 298 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MMP14P50281 582 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 RPL38P63173 70 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 TPRG1LQ5T0D9 272 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 DCST1Q5T197 706 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SV2AQ7L0J3 742 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ADGRG6Q86SQ4 1221 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms