RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FNDC3AQ9Y2H6 1198 aaKnown RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 CRYL1Q9Y2S2 319 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 KIAA1549LQ6ZVL6 1849 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 NPIPB15A6NHN6 443 aaPredicted RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 A8MX80 341 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 GSTA1P08263 222 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 BGNP21810 368 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 GJA4P35212 333 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 OPRD1P41143 372 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 CDKN1CP49918 316 aaPredicted RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 ST8SIA6P61647 398 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 XIAPP98170 497 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 SEMG2Q02383 582 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 TAF1BQ53T94 588 aaPredicted RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 HECTD2Q5U5R9 776 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 TSPAN33Q86UF1 283 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 SFTPA1Q8IWL2 248 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 PHTF2Q8N3S3 785 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 CCDC63Q8NA47 563 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 SCRN2Q96FV2 425 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 LYSMD1Q96S90 227 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 C1QTNF1Q9BXJ1 281 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 MANSC1Q9H8J5 431 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 PLA2G4CQ9UP65 541 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 PPIL1Q9Y3C6 166 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 LEFTY1O75610 366 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 PROCP04070 461 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 CTSLP07711 333 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 BPGMP07738 259 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 CRABP2P29373 138 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 PMLP29590 882 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 GDI1P31150 447 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 SLC12A2P55011 1212 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 ARSIQ5FYB1 569 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 PSAPL1Q6NUJ1 521 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 PIANPQ8IYJ0 282 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 TERB1Q8NA31 727 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 CHFRQ96EP1 664 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 MCCC1Q96RQ3 725 aaPredicted RBP16.84■□□□□ 0.29
CLN3-252ENST00000636907 FAM96AQ9H5X1 160 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 SLCO1B3Q9NPD5 702 aa16.84■□□□□ 0.29
CLN3-252ENST00000636907 INTS10Q9NVR2 710 aaKnown RBP16.84■□□□□ 0.29
CLN3-252ENST00000636907 MUC22E2RYF6 1773 aaPredicted RBP16.84■□□□□ 0.29
CLN3-252ENST00000636907 SZT2Q5T011 3432 aa16.83■□□□□ 0.29
CLN3-252ENST00000636907 SCN8AQ9UQD0 1980 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 A0A1W2PQ67 120 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 ECI2O75521 394 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 NEFHP12036 1026 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 SF3A3Q12874 501 aaKnown RBP eCLIP16.83■□□□□ 0.28
CLN3-252ENST00000636907 COL19A1Q14993 1142 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 EIF4HQ15056 248 aaKnown RBP16.83■□□□□ 0.28
CLN3-252ENST00000636907 ZRANB3Q5FWF4 1079 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 LRRC73Q5JTD7 316 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 ZNF549Q6P9A3 640 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 CRTC1Q6UUV9 634 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 TPRG1Q6ZUI0 275 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 USP45Q70EL2 814 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 PIGWQ7Z7B1 504 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 NUDCD3Q8IVD9 361 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 SPNS2Q8IVW8 549 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 CENPLQ8N0S6 344 aaPredicted RBP16.83■□□□□ 0.28
CLN3-252ENST00000636907 SCG3Q8WXD2 468 aaKnown RBP16.83■□□□□ 0.28
CLN3-252ENST00000636907 SEC16BQ96JE7 1060 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 ELAC2Q9BQ52 826 aaKnown RBP16.83■□□□□ 0.28
CLN3-252ENST00000636907 BRD9Q9H8M2 597 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 SIRPGQ9P1W8 387 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 IL36AQ9UHA7 158 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 ACOT9Q9Y305 439 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 VWA7Q9Y334 891 aa16.83■□□□□ 0.28
CLN3-252ENST00000636907 BIRC5O15392 142 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 DNAJC6O75061 913 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 CDKN2DP55273 166 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 LRIT3Q3SXY7 679 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 CCDC153Q494R4 210 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 FNDC3BQ53EP0 1204 aaKnown RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 GKAP1Q5VSY0 366 aaPredicted RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 LRRC66Q68CR7 880 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 FAM45BPQ6NSW5 357 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 CGB2Q6NT52 195 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 BRAT1Q6PJG6 821 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 FAM45AQ8TCE6 357 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 KCTD4Q8WVF5 259 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 LPGAT1Q92604 370 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 TSPAN17Q96FV3 270 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 TCF12Q99081 682 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 C19orf43Q9BQ61 176 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 TRMT61BQ9BVS5 477 aaKnown RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 PITPNM3Q9BZ71 974 aa16.82■□□□□ 0.28
CLN3-252ENST00000636907 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 CORO1CQ9ULV4 474 aaPredicted RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 RUVBL2Q9Y230 463 aaKnown RBP16.82■□□□□ 0.28
CLN3-252ENST00000636907 A0A087X1B8 175 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 GPR39O43194 453 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 EDF1O60869 148 aaKnown RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 NDUFS3O75489 264 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 COL6A2P12110 1019 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 HLA-EP13747 358 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 BPIP17213 487 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 IGFBP4P22692 258 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 LHCGRP22888 699 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms