RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 MOSPD1Q9UJG1 213 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 LOXL2Q9Y4K0 774 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 RNF215Q9Y6U7 377 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 A8MX80 341 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 FLNBO75369 2602 aaKnown RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 PGLSO95336 258 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 PYGLP06737 847 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 LIPCP11150 499 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 SKILP12757 684 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 PLA2G2AP14555 144 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 CES1P23141 567 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 CD82P27701 267 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 CDK3Q00526 305 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 TRAF2Q12933 501 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 HGSNATQ68CP4 663 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 XKR5Q6UX68 686 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 NLRP8Q86W28 1048 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 SLITRK4Q8IW52 837 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 PELI3Q8N2H9 469 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 TEX26Q8N6G2 289 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 FAM71BQ8TC56 605 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 AKAP7Q9P0M2 348 aaPredicted RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 AMACRQ9UHK6 382 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 DNPEPQ9ULA0 475 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 CPNE6O95741 557 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 CEACAM5P06731 702 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 IVLP07476 585 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 ZNF30P17039 623 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 GPR3P46089 330 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 TPM4P67936 248 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 SLC25A11Q02978 314 aaKnown RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 IQCB1Q15051 598 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 ZSCAN23Q3MJ62 389 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 TIGD7Q6NT04 549 aaPredicted RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 JAMLQ86YT9 394 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 Q8N9G6 341 aaPredicted RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 ZDHHC1Q8WTX9 485 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 FATE1Q969F0 183 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 POLR1EQ9GZS1 481 aaKnown RBP18.4■□□□□ 0.54
CLN3-241ENST00000635861 SEPT10Q9P0V9 454 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 ANAPC7Q9UJX3 599 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 SLC17A4Q9Y2C5 497 aa18.4■□□□□ 0.54
CLN3-241ENST00000635861 NPIPB15A6NHN6 443 aaPredicted RBP18.39■□□□□ 0.53
CLN3-241ENST00000635861 SERPING1P05155 500 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 TCF4P15884 667 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 LHCGRP22888 699 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 ETV3P41162 512 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 B4GALNT1Q00973 533 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 KRT81Q14533 505 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 HADHQ16836 314 aaKnown RBP18.39■□□□□ 0.53
CLN3-241ENST00000635861 MAP9Q49MG5 647 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 ALG1LQ6GMV1 187 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 RAET1GQ6H3X3 334 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 HSD11B1LQ7Z5J1 315 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 TECPR1Q7Z6L1 1165 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 PIM3Q86V86 326 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 CCL4L1Q8NHW4 92 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 MED8Q96G25 268 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 SCARF2Q96GP6 870 aaPredicted RBP18.39■□□□□ 0.53
CLN3-241ENST00000635861 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.39■□□□□ 0.53
CLN3-241ENST00000635861 THAP2Q9H0W7 228 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 CDH19Q9H159 772 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 PISDQ9UG56 409 aa18.39■□□□□ 0.53
CLN3-241ENST00000635861 BOD1L1Q8NFC6 3051 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 SDK2Q58EX2 2172 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 TTC24A2A3L6 582 aaPredicted RBP18.38■□□□□ 0.53
CLN3-241ENST00000635861 MYO1FO00160 1098 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 HGSO14964 777 aaPredicted RBP18.38■□□□□ 0.53
CLN3-241ENST00000635861 FZD6O60353 706 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 CYP1A2P05177 515 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 FGF1P05230 155 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 MAXP61244 160 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 ZBED6P86452 979 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 DENND2CQ68D51 928 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 ZNF765Q7L2R6 523 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 NRROSQ86YC3 692 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 PIH1D2Q8WWB5 315 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 DPYSL5Q9BPU6 564 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 NUP85Q9BW27 656 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 SPATS2LQ9NUQ6 558 aaKnown RBP18.38■□□□□ 0.53
CLN3-241ENST00000635861 TAAR2Q9P1P5 351 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 LCMT1Q9UIC8 334 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 SUFUQ9UMX1 484 aa18.38■□□□□ 0.53
CLN3-241ENST00000635861 RHPN2P1A8MT19 583 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 CA4P22748 312 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 IL4RP24394 825 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 PBX1P40424 430 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 GARSP41250 739 aaKnown RBP18.37■□□□□ 0.53
CLN3-241ENST00000635861 GPR1P46091 355 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 GNPDA1P46926 289 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 TRA2AQ13595 282 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-241ENST00000635861 PAFAH1B3Q15102 231 aaKnown RBP18.37■□□□□ 0.53
CLN3-241ENST00000635861 TMEM164Q5U3C3 297 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 TXNRD3NBQ6F5E7 133 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 ADAMTSL4Q6UY14 1074 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 Q6ZVL8 140 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 FUCA2Q9BTY2 467 aa18.37■□□□□ 0.53
CLN3-241ENST00000635861 A0A0J9YYE9 177 aa18.36■□□□□ 0.53
CLN3-241ENST00000635861 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.36■□□□□ 0.53
CLN3-241ENST00000635861 TRBC1P01850 177 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms