RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 CTBP1Q13363 440 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 LRRC73Q5JTD7 316 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 IER5LQ5T953 404 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 MRNIPQ6NTE8 343 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 TRIM67Q6ZTA4 783 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 KIAA0408Q6ZU52 694 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 TRMT11Q7Z4G4 463 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 MMAAQ8IVH4 418 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FAM76AQ8TAV0 307 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FAM3CQ92520 227 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 C19orf43Q9BQ61 176 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 B4GALT6Q9UBX8 382 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FBXO5Q9UKT4 447 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 OR51F1A6NGY5 319 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 TRIM49D1C9J1S8 452 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 CD3EAPO15446 510 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 RNASEH1O60930 286 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 NR1D1P20393 614 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 SLC1A2P43004 574 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 SEMG2Q02383 582 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 CAMK2GQ13555 558 aaPredicted RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 ARHGEF7Q14155 803 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 MROH9Q5TGP6 573 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FAM46CQ5VWP2 391 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 LRRC66Q68CR7 880 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 ERAP2Q6P179 960 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 PARS2Q7L3T8 475 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 TSPAN33Q86UF1 283 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 DENND6AQ8IWF6 608 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 C2CD4AQ8NCU7 369 aaPredicted RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 PBXIP1Q96AQ6 731 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 EID2BQ96D98 161 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 ERLEC1Q96DZ1 483 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 RBBP8Q99708 897 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 PCDH12Q9NPG4 1184 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 CATSPERZQ9NTU4 200 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FKBPLQ9UIM3 349 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 FNDC3AQ9Y2H6 1198 aaKnown RBP22.25■■□□□ 1.15
ATG4D-209ENST00000588857 ACTL7BQ9Y614 415 aa22.25■■□□□ 1.15
ATG4D-209ENST00000588857 ZNF106Q9H2Y7 1883 aaKnown RBP22.24■■□□□ 1.15
ATG4D-209ENST00000588857 VIPR1P32241 457 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 PSMD8P48556 350 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 SIGLEC14Q08ET2 396 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 BMPR2Q13873 1038 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 STARD3Q14849 445 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 FASTKD1Q53R41 847 aaKnown RBP22.24■■□□□ 1.15
ATG4D-209ENST00000588857 FBXL19Q6PCT2 694 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 SDCCAG8Q86SQ7 713 aaPredicted RBP22.24■■□□□ 1.15
ATG4D-209ENST00000588857 UBALD2Q8IYN6 164 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 GPR150Q8NGU9 434 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 MZB1Q8WU39 189 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 DUSP12Q9UNI6 340 aa22.24■■□□□ 1.15
ATG4D-209ENST00000588857 A0A1W2PPM1 405 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 H7C0S8 307 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 KLF8O95600 359 aaPredicted RBP22.23■■□□□ 1.15
ATG4D-209ENST00000588857 ITGA2BP08514 1039 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 ZNF30P17039 623 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 MC4RP32245 332 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 MRPS21P82921 87 aaKnown RBP22.23■■□□□ 1.15
ATG4D-209ENST00000588857 MPP1Q00013 466 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 FBXO43Q4G163 708 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 CILP2Q8IUL8 1156 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 IL17RCQ8NAC3 791 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 ARRDC3Q96B67 414 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 SMC6Q96SB8 1091 aa22.23■■□□□ 1.15
ATG4D-209ENST00000588857 MAN2B1O00754 1011 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 AHSGP02765 367 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 LHCGRP22888 699 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 SUOXP51687 545 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 LIMK2P53671 638 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 PPP2R2AP63151 447 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 PTSQ03393 145 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 DNAJC3Q13217 504 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 DPPA4Q7L190 304 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 ARFGAP2Q8N6H7 521 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 ATXN7L3BQ96GX2 97 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 SGSM3Q96HU1 749 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 GABRG3Q99928 467 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 RSPH9Q9H1X1 276 aaPredicted RBP22.22■■□□□ 1.15
ATG4D-209ENST00000588857 RHOJQ9H4E5 214 aa22.22■■□□□ 1.15
ATG4D-209ENST00000588857 F7P08709 466 aaPredicted RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 CHRM1P11229 460 aaPredicted RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 BRAFP15056 766 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 KRT4P19013 534 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 PMLP29590 882 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 METAP1P53582 386 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 MLF2Q15773 248 aaPredicted RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 MICALCLQ6ZW33 695 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 ZC3HC1Q86WB0 502 aaKnown RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 CBARPQ8N350 705 aaPredicted RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 TXNDC5Q8NBS9 432 aaKnown RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 VPS39Q96JC1 886 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 SELENOSQ9BQE4 189 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 MARCH4Q9P2E8 410 aaPredicted RBP22.21■■□□□ 1.15
ATG4D-209ENST00000588857 APPL1Q9UKG1 709 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 SLC30A1Q9Y6M5 507 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 HMX2A2RU54 273 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 TMEM221A6NGB7 291 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 M0R296 226 aa22.21■■□□□ 1.15
ATG4D-209ENST00000588857 HOXB2P14652 356 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms