RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PRLP01236 227 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 TNFP01375 233 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 MMP2P08253 660 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ALPIP09923 528 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 CTSEP14091 401 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 LHCGRP22888 699 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 PTPN3P26045 913 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 TEAD1P28347 426 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ATP5OP48047 213 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 HK3P52790 923 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 DPTQ07507 201 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 NOMO1Q15155 1222 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ELOCQ15369 112 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 PROX2Q3B8N5 592 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 TPRG1LQ5T0D9 272 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ZCCHC8Q6NZY4 707 aaKnown RBP13.39□□□□□ -0.27
CLK3-216ENST00000564468 CRTC1Q6UUV9 634 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ZNF765Q7L2R6 523 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 NLRP8Q86W28 1048 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 NRSN1Q8IZ57 195 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 PNPLA1Q8N8W4 532 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 FAM181AQ8N9Y4 354 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 TTC13Q8NBP0 860 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 LMX1AQ8TE12 382 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 HTR3CQ8WXA8 447 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 SCG3Q8WXD2 468 aaKnown RBP13.39□□□□□ -0.27
CLK3-216ENST00000564468 QKIQ96PU8 341 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLK3-216ENST00000564468 RBM15Q96T37 977 aaKnown RBP eCLIP13.39□□□□□ -0.273e-6■■■■□ 24.3
CLK3-216ENST00000564468 CEP41Q9BYV8 373 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 WDR26Q9H7D7 661 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 UCKL1Q9NWZ5 548 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 KLHL8Q9P2G9 620 aaPredicted RBP13.39□□□□□ -0.27
CLK3-216ENST00000564468 TRHDEQ9UKU6 1024 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 DOLKQ9UPQ8 538 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 OR1A2Q9Y585 309 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ADGRG1Q9Y653 693 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 ASXL3Q9C0F0 2248 aa13.39□□□□□ -0.27
CLK3-216ENST00000564468 RP1P56715 2156 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 FAM221BA6H8Z2 402 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 K7ESM1 405 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 TRIM38O00635 465 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 STK10O94804 968 aaKnown RBP13.38□□□□□ -0.27
CLK3-216ENST00000564468 ANXA6P08133 673 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 GM2AP17900 193 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 ACP1P24666 158 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 ETV3P41162 512 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 SRP54P61011 504 aaKnown RBP13.38□□□□□ -0.27
CLK3-216ENST00000564468 E2F1Q01094 437 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 PTSQ03393 145 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 CDK18Q07002 472 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 ADCY2Q08462 1091 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 IHHQ14623 411 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 QPCTQ16769 361 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 CCDC157Q569K6 752 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 PRRT3Q5FWE3 981 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 RAET1GQ6H3X3 334 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 KDM7AQ6ZMT4 941 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 Q6ZVL8 140 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 PID1Q7Z2X4 250 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 HSD11B1LQ7Z5J1 315 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 TECPR1Q7Z6L1 1165 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 TSPAN33Q86UF1 283 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 GKN2Q86XP6 184 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 HID1Q8IV36 788 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 CDKL3Q8IVW4 592 aaPredicted RBP13.38□□□□□ -0.27
CLK3-216ENST00000564468 LRRC8AQ8IWT6 810 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 PLA2G15Q8NCC3 412 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 OR56A4Q8NGH8 313 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 FUBP1Q96AE4 644 aaKnown RBP13.38□□□□□ -0.27
CLK3-216ENST00000564468 PKD2L2Q9NZM6 624 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 TRIM10Q9UDY6 481 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 FAM153AQ9UHL3 310 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 KLF15Q9UIH9 416 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 GUCA1BQ9UMX6 200 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 DGKBQ9Y6T7 804 aa13.38□□□□□ -0.27
CLK3-216ENST00000564468 C1orf232A0A0U1RR37 186 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 RGSL1A5PLK6 1076 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 GOLGA6CA6NDK9 693 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 GOLGA6BA6NDN3 693 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 LMO7DNF2Z398 122 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 CCDC175P0C221 793 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 GOLGA6DP0CG33 693 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 GIMD1P0DJR0 217 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 PYGMP11217 842 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 MYCLP1P12525 358 aaPredicted RBP13.37□□□□□ -0.27
CLK3-216ENST00000564468 CKMT1AP12532 417 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 GPR1P46091 355 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 RPIAP49247 311 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 ACADVLP49748 655 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 STC1P52823 247 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 OTUD4Q01804 1114 aaKnown RBP13.37□□□□□ -0.27
CLK3-216ENST00000564468 WASHC5Q12768 1159 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 DNAJC3Q13217 504 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 ALG11Q2TAA5 492 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 ITPRIPL1Q6GPH6 555 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 LVRNQ6Q4G3 990 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 B4GALNT4Q76KP1 1039 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 TMPRSS7Q7RTY8 843 aa13.37□□□□□ -0.27
CLK3-216ENST00000564468 TMPRSS12Q86WS5 348 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms