RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 C16orf72Q14CZ0 275 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 FASTKD3Q14CZ7 662 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 ACAP1Q15027 740 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 DGKDQ16760 1214 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 MYLK3Q32MK0 819 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 PLA2G4FQ68DD2 849 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 PDPK2PQ6A1A2 396 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 RGMBQ6NW40 437 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 C16orf87Q6PH81 154 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 CATSPERGQ6ZRH7 1159 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 BBS12Q6ZW61 710 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 MOB2Q70IA6 237 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 HAUS6Q7Z4H7 955 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 FAM129CQ86XR2 697 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 ZNF354CQ86Y25 554 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 ABRAQ8N0Z2 381 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 TMEM35BQ8NCS4 154 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 GSDMBQ8TAX9 411 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 SLC35B2Q8TB61 432 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 SNRNP27Q8WVK2 155 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 CPT1BQ92523 772 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 LENG9Q96B70 501 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 NRBF2Q96F24 287 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 RMND5BQ96G75 393 aaPredicted RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 PARK7Q99497 189 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 CGREF1Q99674 301 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 FERMT1Q9BQL6 677 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 ZNF577Q9BSK1 485 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 C1orf50Q9BV19 199 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 TEX13BQ9BXU2 312 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 TRIM8Q9BZR9 551 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 BRD8Q9H0E9 1235 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 QRSL1Q9H0R6 528 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 HIPK3Q9H422 1215 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 MTG2Q9H4K7 406 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 RSAD1Q9HA92 442 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 CLK4Q9HAZ1 481 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 PARVBQ9HBI1 364 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 ALG13Q9NP73 1137 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 ARHGEF38Q9NXL2 777 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 TMEM9Q9P0T7 183 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 SPATA7Q9P0W8 599 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 TXNDC16Q9P2K2 825 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 KLHL42Q9P2K6 505 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 SAE1Q9UBE0 346 aaPredicted RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 USP18Q9UMW8 372 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 INVSQ9Y283 1065 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 B3GNT3Q9Y2A9 372 aa6.65□□□□□ -1.34
USP28-202ENST00000535607 MRPL11Q9Y3B7 192 aaKnown RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 CTDP1Q9Y5B0 961 aaPredicted RBP6.65□□□□□ -1.34
USP28-202ENST00000535607 CCL15-CCL14A0A0B4J2E2 113 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TCRBV9S1A1TA0A576 114 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ARHGEF37A1IGU5 675 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 LCHNA4D1U4 455 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TMEM191CA6NGB0 347 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CAPN8A6NHC0 703 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TMEM114B3SHH9 223 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FAM86B1E9PN63 330 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 GOLGA8SH3BPF8 625 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 GOLGA8MH3BSY2 632 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 GABRDO14764 452 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ADCY6O43306 1168 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 OR6B1O95007 311 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 LYPLA2O95372 231 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 MPIG6BO95866 241 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 LDHAP00338 332 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 FAM163BP0C2L3 166 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FAM86B2P0C5J1 330 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TMEM191BP0C7N4 346 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 KITP10721 976 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 HSPA8P11142 646 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 COX4I1P13073 169 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ALOX15P16050 662 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 ZNF24P17028 368 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NCF2P19878 526 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 CDH3P22223 829 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ME2P23368 584 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SLC16A2P36021 539 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ELK3P41970 407 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CDKN2BP42772 138 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SLC1A6P48664 564 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SLC5A3P53794 718 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TAS2R40P59535 323 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 IL13RA1P78552 427 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SLC25A3Q00325 362 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ROR1Q01973 937 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 RELAQ04206 551 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NOGQ13253 232 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 DMP1Q13316 513 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 ART3Q13508 389 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 RFTN1Q14699 578 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 HERC3Q15034 1050 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 MAPRE2Q15555 327 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CCL15Q16663 113 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 RGS21Q2M5E4 152 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CCDC14Q49A88 953 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 ZBED5Q49AG3 693 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 KCTD21Q4G0X4 260 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CEP55Q53EZ4 464 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TEX44Q53QW1 395 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms