RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LPGAT1Q92604 370 aa11.64□□□□□ -0.55
NPHP4-204ENST00000460696 HHIPL1Q96JK4 782 aa11.64□□□□□ -0.55
NPHP4-204ENST00000460696 GPR21Q99679 349 aa11.64□□□□□ -0.55
NPHP4-204ENST00000460696 PCDHAC1Q9H158 963 aa11.64□□□□□ -0.55
NPHP4-204ENST00000460696 PHIPQ8WWQ0 1821 aa11.64□□□□□ -0.55
NPHP4-204ENST00000460696 COL4A5P29400 1685 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 A0A0J9YYE9 177 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 SH3BGRLO75368 114 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 GM2AP17900 193 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ATP6V1B2P21281 511 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 GSTT1P30711 240 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NIPAL4Q0D2K0 466 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 UPP1Q16831 310 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 VPS26BQ4G0F5 336 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TIGD2Q4W5G0 525 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 PRSS55Q6UWB4 352 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ANKS3Q6ZW76 656 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 DDX53Q86TM3 631 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 RIN3Q8TB24 985 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 C19orf60Q96EN9 201 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 LINGO1Q96FE5 620 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NSMCE2Q96MF7 247 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NR1H4Q96RI1 486 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TBCDQ9BTW9 1192 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 C20orf27Q9GZN8 174 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TMLHEQ9NVH6 421 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 C6orf203Q9P0P8 240 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 STK39Q9UEW8 545 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 MBLAC1A4D2B0 266 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 OR6C75A6NL08 312 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TIPRLO75663 272 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NDST3O95803 873 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 HDCP19113 662 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 PAOXQ6QHF9 649 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 HERC6Q8IVU3 1022 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 PGAM4Q8N0Y7 254 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NKAPQ8N5F7 415 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CNTD1Q8N815 330 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 FIG4Q92562 907 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 MTFMTQ96DP5 389 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 SUSD3Q96L08 255 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ASB2Q96Q27 587 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CDK5RAP1Q96SZ6 601 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CIB1Q99828 191 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TTPALQ9BTX7 342 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CCDC28BQ9BUN5 200 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ASPSCR1Q9BZE9 553 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 NMUR1Q9HB89 426 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 MTF2Q9Y483 593 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 LRRC42Q9Y546 428 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 TBL1XO60907 577 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 RPP40O75818 363 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ESRRBO95718 433 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 IGFBP6P24592 240 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 PIK3CGP48736 1102 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 RAP1GDS1P52306 607 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 YBEYP58557 167 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 BCL2L1Q07817 233 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 BOP1Q14137 746 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 SYTL3Q4VX76 610 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ALFQ53S48 1182 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CACHD1Q5VU97 1274 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ZMIZ2Q8NF64 920 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ABCG8Q9H221 673 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 WDR6Q9NNW5 1121 aaKnown RBP11.63□□□□□ -0.55
NPHP4-204ENST00000460696 KLQ9UEF7 1012 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 POLG2Q9UHN1 485 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF831Q5JPB2 1677 aa11.63□□□□□ -0.55
NPHP4-204ENST00000460696 CUL9Q8IWT3 2517 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 RBM47A0AV96 593 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CCDC162PA2VCL2 907 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 RAD51BO15315 384 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MYO1DO94832 1006 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 C1RP00736 705 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ITGB1P05556 798 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 TYMPP19971 482 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CD68P34810 354 aaPredicted RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 KCNQ1P51787 676 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 GNA12Q03113 381 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 BIRC2Q13490 618 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PARP15Q460N3 678 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 FUT10Q6P4F1 479 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 AFTPHQ6ULP2 937 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 EPGNQ6UW88 154 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF534Q76KX8 674 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 LRRTM3Q86VH5 581 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ACTRT2Q8TDY3 377 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 GAS2L1Q99501 681 aaPredicted RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CCDC106Q9BWC9 280 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 DPY30Q9C005 99 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CCSER2Q9H7U1 834 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 NOL11Q9H8H0 719 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZFP14Q9HCL3 533 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 NDUFA13Q9P0J0 144 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZNHIT2Q9UHR6 403 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MOSPD1Q9UJG1 213 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 GNEQ9Y223 722 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 COL11A2P13942 1736 aaPredicted RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 C15orf38-AP3S2A0A0A6YYH1 394 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms