RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 RAI2Q9Y5P3 530 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ZNF839A8K0R7 811 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 F8W8V4 182 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 H7C4K7 107 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 KCNC1P48547 511 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 SLC7A2P52569 658 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 C1QTNF8P60827 252 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 STX5Q13190 355 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 BLMHQ13867 455 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 KRT80Q6KB66 452 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 MSANTD2Q6P1R3 559 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 LIMS2Q7Z4I7 341 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 LCA5Q86VQ0 697 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 PGBD5Q8N414 524 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 CLDN19Q8N6F1 224 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 C2CD4AQ8NCU7 369 aaPredicted RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 LINC01599Q8WXQ3 324 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 TRIM4Q9C037 500 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 CLIC5Q9NZA1 410 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 VTI1BQ9UEU0 232 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 SUN2Q9UH99 717 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 FAM149AA5PLN7 773 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ALDH1A1P00352 501 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 S100BP04271 92 aaPredicted RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 MYL4P12829 197 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 GGT5P36269 586 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ARCN1P48444 511 aaKnown RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 NOGQ13253 232 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 LAMB3Q13751 1172 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 SFT2D3Q587I9 215 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 SLC30A9Q6PML9 568 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ANKS3Q6ZW76 656 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 CPNE9Q8IYJ1 553 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ST13P4Q8IZP2 240 aaPredicted RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 ENDOVQ8N8Q3 282 aaKnown RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 SMG9Q9H0W8 520 aaKnown RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 VPS45Q9NRW7 570 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 GMPR2Q9P2T1 348 aaKnown RBP11.97□□□□□ -0.49
SMPD4-213ENST00000454468 LRRC42Q9Y546 428 aa11.97□□□□□ -0.49
SMPD4-213ENST00000454468 RGPD3A6NKT7 1758 aaPredicted RBP11.96□□□□□ -0.49
SMPD4-213ENST00000454468 RGPD4Q7Z3J3 1758 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 SLCO1B7G3V0H7 640 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 K7ERQ8 282 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 VPS26AO75436 327 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 GALTP07902 379 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 GRIA3P42263 894 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 AGTR2P50052 363 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 NDST2P52849 883 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 IL1RL1Q01638 556 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 CCNIQ14094 377 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 BTG3Q14201 252 aaPredicted RBP11.96□□□□□ -0.49
SMPD4-213ENST00000454468 DSC3Q14574 896 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 CAMK1DQ8IU85 385 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 B4GALNT2Q8NHY0 566 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 RP9Q8TA86 221 aaKnown RBP11.96□□□□□ -0.49
SMPD4-213ENST00000454468 CDKN2AIPNLQ96HQ2 116 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 SEPHS2Q99611 448 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 RTKNQ9BST9 563 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 HGH1Q9BTY7 390 aa11.96□□□□□ -0.49
SMPD4-213ENST00000454468 UPF3AQ9H1J1 476 aaKnown RBP11.96□□□□□ -0.49
SMPD4-213ENST00000454468 EVLQ9UI08 416 aaPredicted RBP11.96□□□□□ -0.49
SMPD4-213ENST00000454468 SBF1O95248 1867 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 MAGEA13PA6NCF6 341 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 OR6C75A6NL08 312 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 H3BMM5 538 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 PIP5K1BO14986 540 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 PSMC3P17980 439 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 SLC6A4P31645 630 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 RAP1GDS1P52306 607 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 TUBB3Q13509 450 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 SERINC3Q13530 473 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.96□□□□□ -0.5
SMPD4-213ENST00000454468 DET1Q7L5Y6 550 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 OR13J1Q8NGT2 312 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 VPS33AQ96AX1 596 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 FUBP3Q96I24 572 aaKnown RBP eCLIP11.96□□□□□ -0.5
SMPD4-213ENST00000454468 CHCHD3Q9NX63 227 aaKnown RBP11.96□□□□□ -0.5
SMPD4-213ENST00000454468 SPO11Q9Y5K1 396 aa11.96□□□□□ -0.5
SMPD4-213ENST00000454468 NBNO60934 754 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 OAZ2O95190 189 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 FAM163BP0C2L3 166 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UGT1A6P19224 532 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UGT1A1P22309 533 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UGT1A4P22310 534 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UGT1A3P35503 534 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UGT1A5P35504 534 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 SULT2A1Q06520 285 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 IL10RBQ08334 325 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 C11orf91Q3C1V1 193 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 LRRC23Q53EV4 343 aaPredicted RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 MFN1Q8IWA4 741 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.95□□□□□ -0.56e-7■■■□□ 15.7
SMPD4-213ENST00000454468 ULK4Q96C45 1275 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 LINGO1Q96FE5 620 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 TUBGCP5Q96RT8 1024 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 STN1Q9H668 368 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 TNFRSF12AQ9NP84 129 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 ZNHIT2Q9UHR6 403 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CRLS1Q9UJA2 301 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms