RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 R3HCC1LQ7Z5L2 792 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SAPCD2Q86UD0 394 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CACUL1Q86Y37 369 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 OR52L1Q8NGH7 329 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 COL26A1Q96A83 441 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SLC38A2Q96QD8 506 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 DENND2DQ9H6A0 471 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 MRPL17Q9NRX2 175 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 ETAA1Q9NY74 926 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 TBC1D3BA6NDS4 549 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 DNM1LO00429 736 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 MDM4O15151 490 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 TMCC2O75069 709 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 TUSC3Q13454 348 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 ARL13AQ5H913 290 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CPSF7Q8N684 471 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 MOSPD2Q8NHP6 518 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 PTCD2Q8WV60 388 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 TMEM39AQ9NV64 488 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 DMTF1Q9Y222 760 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 GLI3P10071 1580 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SIN3BO75182 1162 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 TIPRLO75663 272 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 FAM155BO75949 473 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 OR6A2O95222 327 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 PKMP14618 531 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 JAK1P23458 1154 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 ADSLP30566 484 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 MC4RP32245 332 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 NDUFAF6Q330K2 333 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SPRYD7Q5W111 196 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 DSELQ8IZU8 1212 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CNTD1Q8N815 330 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 GPR156Q8NFN8 814 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 PSMA8Q8TAA3 256 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 LPPQ93052 612 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 PPP1R14AQ96A00 147 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 ZNF558Q96NG5 402 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CMTM6Q9NX76 183 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 NR2E1Q9Y466 385 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SMIM28A0A1B0GU29 152 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PLIN3O60664 434 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 TBL1XO60907 577 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PGK1P00558 417 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 AMHP03971 560 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 BMP7P18075 431 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 RCVRNP35243 200 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CCR4P51679 360 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 THOP1P52888 689 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 IKBKEQ14164 716 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 GALNT3Q14435 633 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PRAMEF19Q5SWL8 479 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 DET1Q7L5Y6 550 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 KRT74Q7RTS7 529 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SPATA19Q7Z5L4 167 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 KRT77Q7Z794 578 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SMYD1Q8NB12 490 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CIB1Q99828 191 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 FTHL17Q9BXU8 183 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NOL11Q9H8H0 719 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 MRPS7Q9Y2R9 242 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 RGPD2P0DJD1 1756 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 TRAV19A0A0A6YYK7 116 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 HAT1O14929 419 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SUV39H1O43463 412 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 USP2O75604 605 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SERPINB7O75635 380 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PTPN9P43378 593 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 LIMK2P53671 638 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SRP54P61011 504 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PSMD5Q16401 504 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 INTS6LQ5JSJ4 861 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 GK5Q6ZS86 529 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PGAM4Q8N0Y7 254 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PPP1R13LQ8WUF5 828 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 BSNDQ8WZ55 320 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CRISPLD1Q9H336 500 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CHRAC1Q9NRG0 131 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 DMAC2Q9NW81 257 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NCKAP1Q9Y2A7 1128 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 OR6C75A6NL08 312 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NDUFB5O43674 189 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NADKO95544 446 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 AP2A1O95782 977 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SERPINA1P01009 418 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NELFEP18615 380 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 GPR1P46091 355 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 GNPDA1P46926 289 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 YBEYP58557 167 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 LIN52Q52LA3 116 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 MTX3Q5HYI7 312 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 TMEM63BQ5T3F8 832 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 DRICH1Q6PGQ1 229 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 ZBTB46Q86UZ6 589 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 C1orf127Q8N9H9 656 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SPPL2BQ8TCT7 592 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CLP1Q92989 425 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CLPTM1LQ96KA5 538 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 PRDM8Q9NQV8 689 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms