RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 POU5F1BQ06416 359 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CSHL1Q14406 222 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 GRB7Q14451 532 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SKIV2LQ15477 1246 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 NDUFA5Q16718 116 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 KIF19Q2TAC6 998 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ADPRMQ3LIE5 342 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PAGE2BQ5JRK9 111 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CATSPEREQ5SY80 951 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 RBM20Q5T481 1227 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 FAM72AQ5TYM5 149 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 TMEM236Q5W0B7 351 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 BTBD8Q5XKL5 378 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 IL31Q6EBC2 164 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FAM72DQ6L9T8 149 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 UGT3A1Q6NUS8 523 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PRMT9Q6P2P2 845 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 USP43Q70EL4 1123 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ARMCX6Q7L4S7 300 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CATSPER4Q7RTX7 472 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 THAP5Q7Z6K1 395 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FAM72BQ86X60 149 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 TBC1D21Q8IYX1 336 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CHDHQ8NE62 594 aaPredicted RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 REPS2Q8NFH8 660 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CAPSLQ8WWF8 208 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PHF21BQ96EK2 531 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 C19orf60Q96EN9 201 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NGLY1Q96IV0 654 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 MAGED4Q96JG8 741 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SEPHS2Q99611 448 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 KIFC1Q9BW19 673 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CHST12Q9NRB3 414 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FBXO8Q9NRD0 319 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PAK1IP1Q9NWT1 392 aaPredicted RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 GDAP2Q9NXN4 497 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SLCO3A1Q9UIG8 710 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ANAPC2Q9UJX6 822 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 KIAA1257Q9ULG3 409 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SPO11Q9Y5K1 396 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SYNJ2BP-COX16A0A087WUM0 186 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ASPDHA6ND91 283 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NUAK1O60285 661 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 GUCY1B2O75343 617 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 AGXTP21549 392 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PCMT1P22061 227 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 UBA1P22314 1058 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 HRH2P25021 359 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NOS2P35228 1153 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SLC1A2P43004 574 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NPY2RP49146 381 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NEK2P51955 445 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 STX1BP61266 288 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SLC13A2Q13183 592 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 LAMC2Q13753 1193 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 MEP1AQ16819 746 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 TMEM132AQ24JP5 1023 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FAM83EQ2M2I3 478 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SLC10A6Q3KNW5 377 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 RBM48Q5RL73 367 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 IER5Q5VY09 327 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ANKRD34AQ69YU3 496 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 RBM23Q86U06 439 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 PTRH1Q86Y79 214 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 RNF135Q8IUD6 432 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CNTN4Q8IWV2 1026 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 LGI2Q8N0V4 545 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ZCCHC7Q8N3Z6 543 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 NPWQ8N729 165 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PNPLA1Q8N8W4 532 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PDZD8Q8NEN9 1154 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 BPIFB1Q8TDL5 484 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 TRAPPC12Q8WVT3 735 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 S100ZQ8WXG8 99 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 HDAC2Q92769 488 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 TP53INP1Q96A56 240 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 TXNDC15Q96J42 360 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ELMO2Q96JJ3 720 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CHID1Q9BWS9 393 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 DPEP3Q9H4B8 488 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ALG2Q9H553 416 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 CDHR5Q9HBB8 845 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NRBP2Q9NSY0 501 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 COX16Q9P0S2 106 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 SLC2A6Q9UGQ3 507 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 BAG5Q9UL15 447 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 NDUFAF1Q9Y375 327 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 PCDHB3Q9Y5E6 796 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 OAS3Q9Y6K5 1087 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 MYLKQ15746 1914 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TTC34A8MYJ7 566 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 I6L893 689 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 PPP6CO00743 305 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PPEF2O14830 753 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 RGS13O14921 159 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ANGPT2O15123 496 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 HUS1O60921 280 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 FARP2O94887 1054 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 KCNK2O95069 426 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 GABARAPO95166 117 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms