RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MRPS21P82921 87 aaKnown RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 TMPRSS15P98073 1019 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CAMK2GQ13555 558 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 PTPRCAPQ14761 206 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 SMAD1Q15797 465 aaKnown RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 IER5LQ5T953 404 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 FAM46CQ5VWP2 391 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CRTC1Q6UUV9 634 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 PACS1Q6VY07 963 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 TAOK1Q7L7X3 1001 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 TRMT11Q7Z4G4 463 aaKnown RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 STRA8Q7Z7C7 330 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 TTC7BQ86TV6 843 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 OR4L1Q8NH43 312 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 PIP4K2CQ8TBX8 421 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 PPP1R16AQ96I34 528 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UGT1A7Q9HAW7 530 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UGT1A10Q9HAW8 530 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UGT1A8Q9HAW9 530 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 ZDHHC4Q9NPG8 344 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 PRDM6Q9NQX0 595 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 POLR3BQ9NW08 1133 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 IL17CQ9P0M4 197 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 GGT7Q9UJ14 662 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 SARDHQ9UL12 918 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CCDC162PA2VCL2 907 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 NPIPB15A6NHN6 443 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 C1QTNF3-AMACRE9PGA6 284 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 MAN2B1O00754 1011 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SYNCRIPO60506 623 aaKnown RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 RNASEH1O60930 286 aaKnown RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 CLDN7O95471 211 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 IL1BP01584 269 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SLC4A1P02730 911 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 KRT15P19012 456 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 VIPR1P32241 457 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SPRP35270 261 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 WASP42768 502 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SUOXP51687 545 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 MAGOHP61326 146 aaKnown RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 FBXO43Q4G163 708 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 C2orf27AQ580R0 203 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 ERAP2Q6P179 960 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 AFTPHQ6ULP2 937 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 KIAA0408Q6ZU52 694 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 C2CD4AQ8NCU7 369 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 GPR150Q8NGU9 434 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 FAM3CQ92520 227 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 ARRDC3Q96B67 414 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 MTBPQ96DY7 904 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SGSM3Q96HU1 749 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 GABRG3Q99928 467 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SUDS3Q9H7L9 328 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-209ENST00000573474 PCDH12Q9NPG4 1184 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 DYRK4Q9NR20 520 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SENP1Q9P0U3 644 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 SLC17A6Q9P2U8 582 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 B4GALT6Q9UBX8 382 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 DUSP12Q9UNI6 340 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 PSAT1Q9Y617 370 aa13.69□□□□□ -0.22
CCDC40-209ENST00000573474 MYLKQ15746 1914 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 A0A0U1RQS6 177 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 A8MX80 341 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 H7C0S8 307 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 CCL22O00626 93 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 CD3EAPO15446 510 aaKnown RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 KLF8O95600 359 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 GOT2P00505 430 aaKnown RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 MT-ND3P03897 115 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 ZNF30P17039 623 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 PTPN5P54829 565 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 ZP2Q05996 745 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 ILF2Q12905 390 aaKnown RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 DNAJC3Q13217 504 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 ARHGEF7Q14155 803 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 STARD3Q14849 445 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 MLF2Q15773 248 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 POM121L1PQ3SYA9 428 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 ZNF470Q6ECI4 717 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 MRNIPQ6NTE8 343 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 DPPA4Q7L190 304 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 PARS2Q7L3T8 475 aaKnown RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 PTAR1Q7Z6K3 402 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 SDCCAG8Q86SQ7 713 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 TSPAN33Q86UF1 283 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 TRABD2AQ86V40 505 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 EXOC3L1Q86VI1 746 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 MMAAQ8IVH4 418 aaKnown RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 CBARPQ8N350 705 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 OTUD6BQ8N6M0 293 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 IL17RCQ8NAC3 791 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 MZB1Q8WU39 189 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 EID2BQ96D98 161 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 RBBP8Q99708 897 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 HDAC8Q9BY41 377 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 RSPH9Q9H1X1 276 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-209ENST00000573474 FBRSQ9HAH7 460 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 BPIFA1Q9NP55 256 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 CATSPERZQ9NTU4 200 aa13.68□□□□□ -0.22
CCDC40-209ENST00000573474 FBXO5Q9UKT4 447 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms