RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CKAP2Q8WWK9 683 aa21.3■■□□□ 1
CLN3-209ENST00000561689 ECHDC3Q96DC8 303 aa21.3■■□□□ 1
CLN3-209ENST00000561689 VPS11Q9H270 941 aa21.3■■□□□ 1
CLN3-209ENST00000561689 ANKRD36A6QL64 1941 aa21.29■■□□□ 1
CLN3-209ENST00000561689 TRIOBPQ9H2D6 2365 aa21.29■■□□□ 1
CLN3-209ENST00000561689 OPRD1P41143 372 aa21.29■■□□□ 1
CLN3-209ENST00000561689 LEPRP48357 1165 aaKnown RBP21.29■■□□□ 1
CLN3-209ENST00000561689 ST8SIA6P61647 398 aa21.29■■□□□ 1
CLN3-209ENST00000561689 SEMA3AQ14563 771 aa21.29■■□□□ 1
CLN3-209ENST00000561689 USP10Q14694 798 aaKnown RBP21.29■■□□□ 1
CLN3-209ENST00000561689 SLC41A1Q8IVJ1 513 aa21.29■■□□□ 1
CLN3-209ENST00000561689 GPATCH11Q8N954 259 aa21.29■■□□□ 1
CLN3-209ENST00000561689 BCAS4Q8TDM0 211 aa21.29■■□□□ 1
CLN3-209ENST00000561689 ISL2Q96A47 359 aa21.29■■□□□ 1
CLN3-209ENST00000561689 TRMT61BQ9BVS5 477 aaKnown RBP21.29■■□□□ 1
CLN3-209ENST00000561689 CCDC134Q9H6E4 229 aa21.29■■□□□ 1
CLN3-209ENST00000561689 CATSPERZQ9NTU4 200 aa21.29■■□□□ 1
CLN3-209ENST00000561689 MKS1Q9NXB0 559 aa21.29■■□□□ 1
CLN3-209ENST00000561689 FKBPLQ9UIM3 349 aa21.29■■□□□ 1
CLN3-209ENST00000561689 COLQQ9Y215 455 aaPredicted RBP21.29■■□□□ 1
CLN3-209ENST00000561689 PLLPQ9Y342 182 aa21.29■■□□□ 1
CLN3-209ENST00000561689 C1orf232A0A0U1RR37 186 aa21.28■■□□□ 1
CLN3-209ENST00000561689 WDR91A4D1P6 747 aa21.28■■□□□ 1
CLN3-209ENST00000561689 WASH3PC4AMC7 463 aa21.28■■□□□ 1
CLN3-209ENST00000561689 H3BQ06 376 aaPredicted RBP21.28■■□□□ 1
CLN3-209ENST00000561689 FOXN2P32314 431 aa21.28■■□□□ 1
CLN3-209ENST00000561689 CRHR1P34998 444 aa21.28■■□□□ 1
CLN3-209ENST00000561689 MAGEA12P43365 314 aa21.28■■□□□ 1
CLN3-209ENST00000561689 COL19A1Q14993 1142 aa21.28■■□□□ 1
CLN3-209ENST00000561689 MRNIPQ6NTE8 343 aa21.28■■□□□ 1
CLN3-209ENST00000561689 GDPD4Q6W3E5 623 aa21.28■■□□□ 1
CLN3-209ENST00000561689 PLPP6Q8IY26 295 aa21.28■■□□□ 1
CLN3-209ENST00000561689 PHTF2Q8N3S3 785 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ZNF641Q96N77 438 aaPredicted RBP21.28■■□□□ 1
CLN3-209ENST00000561689 KLHL32Q96NJ5 620 aa21.28■■□□□ 1
CLN3-209ENST00000561689 HEPHQ9BQS7 1158 aa21.28■■□□□ 1
CLN3-209ENST00000561689 USP15Q9Y4E8 981 aaPredicted RBP21.28■■□□□ 1
CLN3-209ENST00000561689 NUMBLQ9Y6R0 609 aa21.28■■□□□ 1
CLN3-209ENST00000561689 FAM95CA0A1B0GW59 222 aa21.28■■□□□ 1
CLN3-209ENST00000561689 TBC1D3BA6NDS4 549 aa21.28■■□□□ 1
CLN3-209ENST00000561689 CAPN8A6NHC0 703 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ECI2O75521 394 aa21.28■■□□□ 1
CLN3-209ENST00000561689 LEFTY1O75610 366 aa21.28■■□□□ 1
CLN3-209ENST00000561689 S1PR4O95977 384 aa21.28■■□□□ 1
CLN3-209ENST00000561689 PSMA3P25788 255 aa21.28■■□□□ 1
CLN3-209ENST00000561689 HMGCLP35914 325 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ETV4P43268 484 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ARSIQ5FYB1 569 aa21.28■■□□□ 1
CLN3-209ENST00000561689 CNPY4Q8N129 248 aa21.28■■□□□ 1
CLN3-209ENST00000561689 TERB1Q8NA31 727 aa21.28■■□□□ 1
CLN3-209ENST00000561689 CHFRQ96EP1 664 aa21.28■■□□□ 1
CLN3-209ENST00000561689 CHMP6Q96FZ7 201 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ZNF317Q96PQ6 595 aaPredicted RBP21.28■■□□□ 1
CLN3-209ENST00000561689 NDNQ99608 321 aa21.28■■□□□ 1
CLN3-209ENST00000561689 ZFYVE1Q9HBF4 777 aa21.28■■□□□ 1
CLN3-209ENST00000561689 IL17CQ9P0M4 197 aa21.28■■□□□ 1
CLN3-209ENST00000561689 PHTF1Q9UMS5 762 aa21.28■■□□□ 1
CLN3-209ENST00000561689 PKP3Q9Y446 797 aa21.28■■□□□ 1
CLN3-209ENST00000561689 WASF2Q9Y6W5 498 aa21.28■■□□□ 1
CLN3-209ENST00000561689 A0A096LPK6 155 aa21.27■■□□□ 1
CLN3-209ENST00000561689 NPIPB15A6NHN6 443 aaPredicted RBP21.27■■□□□ 1
CLN3-209ENST00000561689 TCP11X1B4DZS4 312 aa21.27■■□□□ 1
CLN3-209ENST00000561689 CLDN7O95471 211 aa21.27■■□□□ 1
CLN3-209ENST00000561689 POU3F3P20264 500 aaPredicted RBP21.27■■□□□ 1
CLN3-209ENST00000561689 VASPP50552 380 aaPredicted RBP21.27■■□□□ 1
CLN3-209ENST00000561689 FNDC3BQ53EP0 1204 aaKnown RBP21.27■■□□□ 1
CLN3-209ENST00000561689 LRRC73Q5JTD7 316 aa21.27■■□□□ 1
CLN3-209ENST00000561689 RBM20Q5T481 1227 aaKnown RBP21.27■■□□□ 1
CLN3-209ENST00000561689 AFTPHQ6ULP2 937 aa21.27■■□□□ 1
CLN3-209ENST00000561689 TSPAN33Q86UF1 283 aa21.27■■□□□ 1
CLN3-209ENST00000561689 LMNTD2Q8IXW0 634 aa21.27■■□□□ 1
CLN3-209ENST00000561689 GPR150Q8NGU9 434 aa21.27■■□□□ 1
CLN3-209ENST00000561689 ELMO2Q96JJ3 720 aa21.27■■□□□ 1
CLN3-209ENST00000561689 ANTXRLA6NF34 631 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 PHGDHO43175 533 aaKnown RBP21.27■□□□□ 0.99
CLN3-209ENST00000561689 C2P06681 752 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 CTSLP07711 333 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 VIMP08670 466 aaKnown RBP21.27■□□□□ 0.99
CLN3-209ENST00000561689 MC4RP32245 332 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 HADHAP40939 763 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 RGS19P49795 217 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 CDKN1CP49918 316 aaPredicted RBP21.27■□□□□ 0.99
CLN3-209ENST00000561689 CDKN3Q16667 212 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 FASTKD1Q53R41 847 aaKnown RBP21.27■□□□□ 0.99
CLN3-209ENST00000561689 C16orf46Q6P387 395 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 RAPH1Q70E73 1250 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 ARMC2Q8NEN0 867 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 MAGEB18Q96M61 343 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 CCT8L2Q96SF2 557 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 FAM96AQ9H5X1 160 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 CRYL1Q9Y2S2 319 aa21.27■□□□□ 0.99
CLN3-209ENST00000561689 TMEM265A0A087WTH1 108 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 SRRM3A6NNA2 597 aaPredicted RBP21.26■□□□□ 0.99
CLN3-209ENST00000561689 HLA-EP13747 358 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 PMLP29590 882 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 IRF9Q00978 393 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 ZNF460Q14592 562 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 EIF4HQ15056 248 aaKnown RBP21.26■□□□□ 0.99
CLN3-209ENST00000561689 ITPRIPL2Q3MIP1 535 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 SDCCAG8Q86SQ7 713 aaPredicted RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms