RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 LMX1AQ8TE12 382 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 KRT35Q92764 455 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TSACCQ96A04 125 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 DTD2Q96FN9 168 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 APOLD1Q96LR9 279 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ZNF830Q96NB3 372 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 LRRC61Q9BV99 259 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 DUSP23Q9BVJ7 150 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 LACRTQ9GZZ8 138 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 SAE1Q9UBE0 346 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 SPASTQ9UBP0 616 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 APOBEC3BQ9UH17 382 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TRPM6Q9BX84 2022 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ITPR1Q14643 2758 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 hCG_1818297A0A087WSY0 165 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 A0A0J9YYE9 177 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TMEM8BA6NDV4 472 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TMEM202A6NGA9 273 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 LMO7DNF2Z398 122 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PSMD11O00231 422 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 YY2O15391 372 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PJA2O43164 708 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CST8O60676 142 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 ZRANB2O95218 330 aaKnown RBP eCLIP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TRBC1P01850 177 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CELA2BP08218 269 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 ALPPL2P10696 532 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PECAM1P16284 738 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TSHRP16473 764 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CDC25BP30305 580 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 ETV3P41162 512 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 NR2C2P49116 596 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 HK3P52790 923 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 KIAA1024LP59773 190 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 SRP54P61011 504 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 RPL26P61254 145 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PTSQ03393 145 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 AP1B1Q10567 949 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TFDP2Q14188 446 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PRKD1Q15139 912 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 LLGL1Q15334 1064 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CDKN3Q16667 212 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 DEFB133Q30KQ1 61 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PRRT3Q5FWE3 981 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 FAXCQ5TGI0 409 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 ENPP7Q6UWV6 458 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 RFLNAQ6ZTI6 216 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 Q6ZVL8 140 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 USP45Q70EL2 814 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 B4GALNT4Q76KP1 1039 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 HID1Q8IV36 788 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 RCOR2Q8IZ40 523 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 ACRBPQ8NEB7 543 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 OR1E3Q8WZA6 343 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TADA1Q96BN2 335 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 NUS1Q96E22 293 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 WDR92Q96MX6 357 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 BAG1Q99933 345 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 LGR4Q9BXB1 951 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CEP41Q9BYV8 373 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 BRD8Q9H0E9 1235 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 PCDH9Q9HC56 1237 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 LUC7LQ9NQ29 371 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 RPL26L1Q9UNX3 145 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CHKBQ9Y259 395 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 TTLL3Q9Y4R7 772 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 DGKBQ9Y6T7 804 aa10.28□□□□□ -0.76
CCDC88C-206ENST00000553437 CAPN8A6NHC0 703 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TAF4O00268 1085 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TNFRSF10CO14798 259 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 PPP1R12AO14974 1030 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 RASGRP1O95267 797 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 NFKBIAP25963 317 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 HTR1BP28222 390 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TEAD1P28347 426 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 CD86P42081 329 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 BLKP51451 505 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 VAV2P52735 878 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 STC1P52823 247 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 DAB2P98082 770 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 INSM1Q01101 510 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 DPTQ07507 201 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 QPCTQ16769 361 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 ODF2Q5BJF6 829 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TFDP3Q5H9I0 405 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 HES3Q5TGS1 186 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 KAZNQ674X7 775 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 LRRC66Q68CR7 880 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 DENND2CQ68D51 928 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 ZCCHC8Q6NZY4 707 aaKnown RBP10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 DAAM2Q86T65 1068 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 NLRP8Q86W28 1048 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 NDUFAF2Q8N183 169 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 CACTIN-AS1Q8N1I8 211 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 LRRC57Q8N9N7 239 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 EXD1Q8NHP7 514 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 IMP4Q96G21 291 aaKnown RBP10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 PDXPQ96GD0 296 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms